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An organized view of the transcripome



Library:15061 (dbEST ID)

tcbk

Library Description

Organism:Oncorhynchus mykiss
Developmental stage:from embryos to adults
Tissue:multi-tissues
Vector:pT7T3D-PacI
Lab host:DH10B

AGENAE Rainbow trout multi-tissues - normalized + 2 subtractions; Clone distribution : AGENAE Resource centre. Francois PIUMI, Francois.Piumi@jouy.inra.fr, INRA, CEA Radiobiologie et Etude du genome (LREG), Domaine de Vilvert, 78352, Jouy-en-Josas cedex, FRANCE, +33 (0) 1.34.65.28.02, +33 (0) 1.34.65.22.73

Source: Guiguen Y, INRA - SCRIBE

Gene Content Analysis

24,317 ESTs from this library were grouped into 10,803 UniGene entries (putative genes) [UniGene build #34, 26-Feb-2013]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).

ESTs TPM   UniGene Entry
275 11309 Omy.137516 TSA: Oncorhynchus mykiss 51443.Onmycontig.
56 2303 Omy.4793 TSA: Oncorhynchus mykiss 138080.Onmycontig.
56 2303 Omy.25542 TSA: Oncorhynchus mykiss 147909.Onmycontig.
54 2221 Omy.28052 Myosin heavy chain.
42 1727 Omy.11111 TSA: Oncorhynchus mykiss mRNA, contig: YGL02.973.C2.
40 1645 Omy.7287 Myosin heavy chain.
40 1645 Omy.31387 Transcribed locus, strongly similar to NP_001134304.1 Exosome complex exonuclease RRP41 [Salmo salar].
38 1563 Omy.9497 Macrophage myristoylated alanine-rich C kinase-like protein.
37 1522 Omy.32375 TSA: Oncorhynchus mykiss mRNA, contig: YGL02.2851.C2.
34 1398 Omy.34428 60S ribosomal protein L11.
32 1316 Omy.9250 TSA: Oncorhynchus mykiss mRNA, contig: YGL02.4661.C1.
31 1275 Omy.5185 TSA: Oncorhynchus mykiss mRNA, contig: O_myk_c213.
31 1275 Omy.40913 TSA: Oncorhynchus mykiss mRNA, contig: YGL02.9348.C2.
30 1234 Omy.535 TSA: Oncorhynchus mykiss mRNA, contig: O_myk_c460.
30 1234 Omy.31737 TSA: Oncorhynchus mykiss mRNA, contig: YGL02.20377.C1.
28 1151 Omy.20922 TSA: Oncorhynchus mykiss 9702.Onmycontig.
26 1069 Omy.30211 TSA: Oncorhynchus mykiss 13134.Onmycontig.
25 1028 Omy.41042 TSA: Oncorhynchus mykiss mRNA, contig: YGL02.43.C5.
25 1028 Omy.33532 TSA: Oncorhynchus mykiss 7775.Onmycontig.
25 1028 Omy.30907 TSA: Oncorhynchus mykiss mRNA, contig: YGL02.14865.C1.
25 1028 Omy.137476 TSA: Oncorhynchus mykiss mRNA, contig: YGL02.3174.C2.
24 987 Omy.8395 TSA: Oncorhynchus mykiss 55724.Onmycontig.
24 987 Omy.12440 TSA: Oncorhynchus mykiss mRNA, contig: YGL02.5249.C1.
23 946 Omy.2678 TSA: Oncorhynchus mykiss mRNA, contig: YGL02.18659.C1.
23 946 Omy.24831 TSA: Oncorhynchus mykiss 62585.Onmycontig.
21 864 Omy.33260 TSA: Oncorhynchus mykiss mRNA, contig: YGL02.52.C1.
20 822 Omy.9170 TSA: Oncorhynchus mykiss mRNA, contig: YGL02.6711.C1.
20 822 Omy.8442 TSA: Oncorhynchus mykiss 140833.Onmycontig.
20 822 Omy.31847 TSA: Oncorhynchus mykiss mRNA, contig: YGL02.1133.C1.
20 822 Omy.15768 Parvalbumin 1.
19 781 Omy.8720 TSA: Oncorhynchus mykiss mRNA, contig: YGL02.12960.C1.
19 781 Omy.8696 40S ribosomal protein S11.
19 781 Omy.8116 C-reactive protein, pentraxin-related.
19 781 Omy.7636 TSA: Oncorhynchus mykiss mRNA, contig: YGL02.8469.C1.
19 781 Omy.56 TSA: Oncorhynchus mykiss mRNA, contig: YGL02.19078.C1.
19 781 Omy.38119 TSA: Oncorhynchus mykiss 59547.Onmycontig.
19 781 Omy.25408 Transcribed locus, strongly similar to XP_004075017.1 PREDICTED: patatin-like phospholipase domain-containing protein 7-like [Oryzias latipes].
19 781 Omy.134191 TSA: Oncorhynchus mykiss 79224.Onmycontig.
19 781 Omy.13409 TSA: Oncorhynchus mykiss 54200.Onmycontig.
19 781 Omy.10583 TSA: Oncorhynchus mykiss mRNA, contig: YGL02.4109.C1.
18 740 Omy.40939 TSA: Oncorhynchus mykiss mRNA, contig: YGL02.5739.C1.
18 740 Omy.38461 TSA: Oncorhynchus mykiss mRNA, contig: YGL02.136.C2.
18 740 Omy.25403 TSA: Oncorhynchus mykiss 13742.Onmycontig.
17 699 Omy.9087 TSA: Oncorhynchus mykiss mRNA, contig: YGL02.5862.C1.
17 699 Omy.7318 TSA: Oncorhynchus mykiss mRNA, contig: YGL02.2132.C1.
17 699 Omy.4864 Transcribed locus, moderately similar to NP_001073457.1 fam212aa gene product [Danio rerio].
17 699 Omy.34629 VHSV-induced protein.
17 699 Omy.33348 TSA: Oncorhynchus mykiss 69420.Onmycontig.
17 699 Omy.31936 TSA: Oncorhynchus mykiss 67913.Onmycontig.
17 699 Omy.25620 Transcribed locus, moderately similar to NP_032062.1 protein fosB [Mus musculus].
17 699 Omy.25536 TSA: Oncorhynchus mykiss 148354.Onmycontig.
17 699 Omy.25375 Transcribed locus, weakly similar to XP_001143834.2 PREDICTED: uncharacterized protein C11orf95 homolog [Pan troglodytes].
17 699 Omy.14116 TSA: Oncorhynchus mykiss mRNA, contig: O_myk_c315.
17 699 Omy.14090 TSA: Oncorhynchus mykiss mRNA, contig: YGL02.8855.C1.
17 699 Omy.11170 TSA: Oncorhynchus mykiss mRNA, contig: YGL02.8746.C1.
17 699 Omy.10220 TSA: Oncorhynchus mykiss 61863.Onmycontig.
16 658 Omy.9086 TSA: Oncorhynchus mykiss mRNA, contig: O_myk_c8.
16 658 Omy.9026 TSA: Oncorhynchus mykiss 62036.Onmycontig.
16 658 Omy.8570 TSA: Oncorhynchus mykiss mRNA, contig: YGL02.6415.C2.
16 658 Omy.7326 TSA: Oncorhynchus mykiss 74826.Onmycontig.
16 658 Omy.5779 Transcribed locus, moderately similar to NP_851295.1 claudin-like protein ZF-A89 [Danio rerio].
16 658 Omy.33616 Fatty acid-binding protein, heart.
16 658 Omy.25602 Transcribed locus, moderately similar to XP_003455973.1 PREDICTED: poliovirus receptor-related protein 3-like [Oreochromis niloticus].
16 658 Omy.23005 TSA: Oncorhynchus mykiss mRNA, contig: YGL02.4300.C1.
16 658 Omy.19735 TSA: Oncorhynchus mykiss 61100.Onmycontig.
16 658 Omy.13888 94 kD glucose-regulated protein.
16 658 Omy.134720 TSA: Oncorhynchus mykiss mRNA, contig: YGL02.773.C1.
16 658 Omy.133767 TSA: Oncorhynchus mykiss mRNA, contig: O_myk_c1377.
15 617 Omy.9568 Complement component C8 gamma.
15 617 Omy.8748 TSA: Oncorhynchus mykiss mRNA, contig: YGL02.6311.C1.
15 617 Omy.8617 TSA: Oncorhynchus mykiss 4030.Onmycontig.
15 617 Omy.8566 TSA: Oncorhynchus mykiss 60513.Onmycontig.
15 617 Omy.8470 TSA: Oncorhynchus mykiss mRNA, contig: YGL02.5884.C2.
15 617 Omy.8036 Slow myosin heavy chain.
15 617 Omy.7782 Nucleoside diphosphate kinase.
15 617 Omy.6286 TSA: Oncorhynchus mykiss 59223.Onmycontig.
15 617 Omy.5114 TSA: Oncorhynchus mykiss 97814.Onmycontig.
15 617 Omy.38462 TSA: Oncorhynchus mykiss mRNA, contig: YGL02.227.C1.
15 617 Omy.36759 TSA: Oncorhynchus mykiss 64472.Onmycontig.
15 617 Omy.26911 TSA: Oncorhynchus mykiss mRNA, contig: YGL02.14245.C1.
15 617 Omy.25525 Transcribed locus, moderately similar to XP_689543.1 PREDICTED: zinc finger and BTB domain-containing protein 22 isoform 1 [Danio rerio].
15 617 Omy.21133 TSA: Oncorhynchus mykiss 23233.Onmycontig.
15 617 Omy.14193 TSA: Oncorhynchus mykiss 33631.Onmycontig.
15 617 Omy.14123 TSA: Oncorhynchus mykiss mRNA, contig: YGL02.15844.C1.
15 617 Omy.139519 TSA: Oncorhynchus mykiss mRNA, contig: YGL02.773.C2.
15 617 Omy.13938 TSA: Oncorhynchus mykiss mRNA, contig: YGL02.19107.C1.
15 617 Omy.1063 Phosphoenolpyruvate carboxykinase.
15 617 Omy.10527 TSA: Oncorhynchus mykiss 59167.Onmycontig.
15 617 Omy.10430 TSA: Oncorhynchus mykiss mRNA, contig: YGL02.21326.C1.
15 617 Omy.10177 TSA: Oncorhynchus mykiss mRNA, contig: YGL02.3565.C2.
14 576 Omy.9503 TSA: Oncorhynchus mykiss 68382.Onmycontig.
14 576 Omy.8714 TSA: Oncorhynchus mykiss 32938.Onmycontig.
14 576 Omy.8238 TSA: Oncorhynchus mykiss mRNA, contig: YGL02.15724.C1.
14 576 Omy.8041 Proteasome subunit N3.
14 576 Omy.780 Hemopexin-like protein variant 1.
14 576 Omy.627 Spastic paraplegia 21 (H. sapiens).
14 576 Omy.40925 TSA: Oncorhynchus mykiss 59406.Onmycontig.
14 576 Omy.32960 TSA: Oncorhynchus mykiss 65701.Onmycontig.
14 576 Omy.32863 Complement component 4.
14 576 Omy.2866 TSA: Oncorhynchus mykiss mRNA, contig: YGL02.6857.C1.

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Source: NCBI UniGene

EST Sequences

26,891 EST sequences from this library have been submitted to the public sequence database as of 26-Feb-2013.

Source: NCBI GenBank

Click the button to save sequences to a file (FASTA format)



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