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An organized view of the transcripome



Library:20401 (dbEST ID)

OSTA

Library Description

Organism:Ovis aries
Tissue:wool follicle
Vector type:plasmid

Wiltshire wool follicles in telogen phase

Source: Brauning R., AgResearch Ltd

Gene Content Analysis

11,356 ESTs from this library were grouped into 4,433 UniGene entries (putative genes) [UniGene build #23, 27-Aug-2011]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).

ESTs TPM   UniGene Entry
259 22807 Oar.87 Eukaryotic translation elongation factor 1 alpha 1.
254 22367 Oar.3379 Transcribed locus, strongly similar to NP_904330.1 cytochrome c oxidase subunit I [Mus musculus].
160 14089 Oar.78 Transcribed locus, strongly similar to XP_002687292.1 PREDICTED: keratin 6A-like [Bos taurus].
106 9334 Oar.1111 Transcribed locus, strongly similar to NP_008415.1 NADH dehydrogenase subunit 4 [Ovis aries].
89 7837 Oar.5971 Transcribed locus, strongly similar to NP_000517.2 keratin, type I cytoskeletal 14 [Homo sapiens].
77 6781 Oar.48 Transcribed locus.
74 6516 Oar.3218 Transcribed locus, strongly similar to NP_001012537.1 aldose reductase [Bos taurus].
72 6340 Oar.13042 Ribosomal protein L4.
71 6252 Oar.13119 Collagen I pro-alpha 2 chain precursor.
66 5812 Oar.760 Vimentin.
66 5812 Oar.270 Transcribed locus, strongly similar to NP_032169.1 guanine nucleotide-binding protein subunit beta-2-like 1 [Mus musculus].
65 5724 Oar.2958 Transcribed locus, strongly similar to NP_031501.1 60S acidic ribosomal protein P0 [Mus musculus].
60 5284 Oar.1444 Transcribed locus, strongly similar to NP_989912.1 60S ribosomal protein L5 [Gallus gallus].
59 5195 Oar.13059 Keratin 5.
51 4491 Oar.1027 Secreted protein, acidic, cysteine-rich (osteonectin).
49 4315 Oar.13048 Collagen, type III, alpha 1.
47 4139 Oar.718 Decorin.
45 3963 Oar.13005 Transcribed locus, strongly similar to NP_008412.1 cytochrome c oxidase subunit III [Ovis aries].
42 3698 Oar.7116 Transcribed locus, strongly similar to NP_071404.2 p53 apoptosis effector related to PMP-22 [Homo sapiens].
37 3258 Oar.261 Transcribed locus, strongly similar to NP_033739.1 actin, cytoplasmic 2 [Mus musculus].
37 3258 Oar.13085 Integral membrane protein 2B.
37 3258 Oar.13024 Transcribed locus, strongly similar to NP_058849.1 40S ribosomal protein S3a [Rattus norvegicus].
35 3082 Oar.2917 Transcribed locus, strongly similar to NP_001006241.1 60S ribosomal protein L3 [Gallus gallus].
34 2994 Oar.5185 Annexin A2.
34 2994 Oar.1153 Beta-2-microglobulin.
33 2906 Oar.207 Transcribed locus, strongly similar to NP_058834.1 40S ribosomal protein SA [Rattus norvegicus].
30 2642 Oar.1395 Transcribed locus, strongly similar to NP_001129408.1 periostin isoform 4 precursor [Homo sapiens].
29 2554 Oar.13945 Transcribed locus, strongly similar to XP_001790536.1 PREDICTED: similar to LOC507464 protein [Bos taurus].
28 2466 Oar.4827 Transcribed locus, strongly similar to NP_008411.1 ATP synthase F0 subunit 6 [Ovis aries].
28 2466 Oar.21752 Transcribed locus, strongly similar to NP_035421.2 60S ribosomal protein L7 [Mus musculus].
28 2466 Oar.13009 Transcribed locus, strongly similar to NP_008418.1 cytochrome b [Ovis aries].
26 2290 Oar.6134 Transcribed locus, strongly similar to XP_592978.4 PREDICTED: similar to cytochrome P450, family 4, subfamily X, polypeptide 1 isoform 1 [Bos taurus].
26 2290 Oar.2933 Ribosomal protein S2.
26 2290 Oar.1844 Keratin 14.
25 2201 Oar.2945 Transcribed locus, strongly similar to NP_001026926.1 60S ribosomal protein L6 [Bos taurus].
25 2201 Oar.14684 Transcribed locus, strongly similar to NP_031501.1 60S acidic ribosomal protein P0 [Mus musculus].
25 2201 Oar.12992 Vitamin D3 up-regulated protein 1.
24 2113 Oar.3212 Ferritin, heavy polypeptide 1.
21 1849 Oar.2898 Transcribed locus, strongly similar to NP_001004379.1 60S ribosomal protein L7a [Gallus gallus].
20 1761 Oar.7952 Transcribed locus, strongly similar to XP_001789391.1 PREDICTED: glycine-N-acyltransferase-like 2 [Bos taurus].
20 1761 Oar.1475 Transcribed locus, strongly similar to NP_036183.1 60S ribosomal protein L8 [Mus musculus].
20 1761 Oar.1461 Gelsolin.
20 1761 Oar.1131 Transcribed locus, strongly similar to NP_003286.1 translationally-controlled tumor protein [Homo sapiens].
20 1761 Oar.10 Transcribed locus, strongly similar to NP_001026007.1 40S ribosomal protein S3 [Gallus gallus].
18 1585 Oar.782 Ubiquitin C.
18 1585 Oar.339 Transcribed locus, strongly similar to NP_034610.1 heat shock protein HSP 90-alpha [Mus musculus].
18 1585 Oar.13082 Transcribed locus, strongly similar to NP_002336.1 lumican precursor [Homo sapiens].
17 1497 Oar.3223 Transcribed locus, strongly similar to NP_058941.1 elongation factor 2 [Rattus norvegicus].
16 1409 Oar.3217 Transcribed locus, strongly similar to NP_001015018.1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Rattus norvegicus].
16 1409 Oar.1832 Transcribed locus, strongly similar to NP_038636.2 nascent polypeptide-associated complex subunit alpha isoform b [Mus musculus].
16 1409 Oar.10407 Transcribed locus, moderately similar to XP_002707852.1 PREDICTED: cornulin-like [Bos taurus].
15 1321 Oar.5542 Transcribed locus, strongly similar to NP_001395.1 elongation factor 1-gamma [Homo sapiens].
15 1321 Oar.4881 Transcribed locus, strongly similar to NP_001035680.1 ribonuclease 4 precursor [Bos taurus].
15 1321 Oar.250 Transcribed locus, strongly similar to NP_999958.1 40S ribosomal protein S8 [Danio rerio].
15 1321 Oar.156 Transcribed locus, strongly similar to NP_001958.2 eukaryotic initiation factor 4A-II [Homo sapiens].
15 1321 Oar.15 Transcribed locus, strongly similar to NP_058856.1 40S ribosomal protein S6 [Rattus norvegicus].
15 1321 Oar.1491 Transcribed locus, strongly similar to NP_001032726.1 transcription factor BTF3 isoform A [Homo sapiens].
15 1321 Oar.13112 Collagen 1.
15 1321 Oar.1150 Transcribed locus, strongly similar to XP_423225.1 PREDICTED: similar to rat ribosomal protein L9 homologue [Gallus gallus].
14 1233 Oar.832 Integrin, beta 5.
14 1233 Oar.6521 Transcribed locus.
14 1233 Oar.5312 Transcribed locus, strongly similar to NP_062745.1 destrin [Mus musculus].
14 1233 Oar.4528 Transcribed locus, strongly similar to NP_001014041.1 heterogeneous nuclear ribonucleoprotein H2 [Rattus norvegicus].
14 1233 Oar.4230 Transcribed locus, strongly similar to NP_071778.2 adenylyl cyclase-associated protein 1 [Rattus norvegicus].
14 1233 Oar.180 Transcribed locus, weakly similar to XP_587468.3 PREDICTED: AHNAK nucleoprotein isoform 1 [Bos taurus].
14 1233 Oar.14660 Transcribed locus, strongly similar to NP_001004379.1 60S ribosomal protein L7a [Gallus gallus].
14 1233 Oar.13226 Transcribed locus, strongly similar to NP_001026768.1 polyadenylate-binding protein 1 [Gallus gallus].
14 1233 Oar.13015 Transcribed locus, strongly similar to NP_003286.1 translationally-controlled tumor protein [Homo sapiens].
13 1145 Oar.7383 Transcribed locus.
13 1145 Oar.5758 Transcribed locus, strongly similar to NP_062005.1 GNAS complex locus GNASL [Rattus norvegicus].
13 1145 Oar.4336 Transcribed locus, strongly similar to NP_031866.2 probable ATP-dependent RNA helicase DDX5 [Mus musculus].
13 1145 Oar.3931 Transcribed locus, strongly similar to NP_001026556.1 heterogeneous nuclear ribonucleoprotein K [Gallus gallus].
13 1145 Oar.2870 Transcribed locus, strongly similar to NP_150638.1 MORF4 family-associated protein 1 [Homo sapiens].
13 1145 Oar.1883 Transcribed locus, strongly similar to NP_038535.2 eukaryotic translation initiation factor 4 gamma 2 isoform 1 [Mus musculus].
13 1145 Oar.151 Transcribed locus, strongly similar to NP_786978.2 annexin A1 [Bos taurus].
13 1145 Oar.13115 Tubulin, alpha 4a.
12 1057 Oar.9946 Transcribed locus, strongly similar to NP_001018079.1 plasminogen activator inhibitor 1 RNA-binding protein isoform 3 [Homo sapiens].
12 1057 Oar.7041 Myosin light chain kinase.
12 1057 Oar.5625 Ribosomal protein L13a.
12 1057 Oar.5058 Transcribed locus, moderately similar to NP_001032523.1 CD59 molecule, complement regulatory protein precursor [Bos taurus].
12 1057 Oar.4887 Transcribed locus, strongly similar to NP_031479.1 peroxiredoxin-6 [Mus musculus].
12 1057 Oar.4493 Transcribed locus, strongly similar to NP_006826.1 cyclin-I [Homo sapiens].
12 1057 Oar.4216 Transcribed locus.
12 1057 Oar.2868 Transcribed locus, strongly similar to NP_776327.1 clusterin preproprotein [Bos taurus].
12 1057 Oar.22928 Laminin receptor 1.
12 1057 Oar.212 Transcribed locus, strongly similar to NP_919223.1 heterogeneous nuclear ribonucleoprotein A3 [Homo sapiens].
12 1057 Oar.13146 Transcribed locus, strongly similar to NP_006817.1 14-3-3 protein theta [Homo sapiens].
12 1057 Oar.1312 Transcribed locus, strongly similar to NP_776884.2 selenoprotein P precursor [Bos taurus].
12 1057 Oar.12821 Isolate sheepB1125c1 MHC class I antigen (ovar).
11 969 Oar.685 Glyceraldehyde-3-phosphate dehydrogenase.
11 969 Oar.4212 Transcribed locus, strongly similar to NP_001026156.1 heterogeneous nuclear ribonucleoproteins A2/B1 [Gallus gallus].
11 969 Oar.4123 Reticulon 4.
11 969 Oar.3327 Transcribed locus.
11 969 Oar.1330 CD9 molecule.
11 969 Oar.1107 Transcribed locus, strongly similar to NP_031531.1 ATP synthase subunit alpha, mitochondrial precursor [Mus musculus].
11 969 Oar.10217 Transcribed locus, strongly similar to XP_002687291.1 PREDICTED: Keratin 77-like [Bos taurus].
10 881 Oar.810 Complement component 3.
10 881 Oar.6410 Transcribed locus, strongly similar to NP_001103558.1 synaptophysin-like 1 [Bos taurus].
10 881 Oar.632 Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide.
10 881 Oar.5524 Transcribed locus, strongly similar to NP_776666.1 annexin A8 [Bos taurus].

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Source: NCBI UniGene

EST Sequences

13,091 EST sequences from this library have been submitted to the public sequence database as of 27-Aug-2011.

Source: NCBI GenBank

Click the button to save sequences to a file (FASTA format)

Keywords

  • skin
  • adult

Source: NCBI Clone Registry



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