Skip Nav

An organized view of the transcripome



Library:22314 (dbEST ID)

CAIC Nematostella vectensis Nemve whole embryos normalized

Library Description

Organism:Nematostella vectensis
Vector:pBluescript_SK+

The library was made from oligo(dT)-primed cDNA and cloned into the pBluescript SK+ vector (Stratagene, La Jolla, CA). Library is normalized. Library constructed at the Sars International Centre for Marine Molecular Biology and sequencing was done at DOE Joint Genome Institute (Walnut Creek, CA).

Source: Lindquist,E.A., Richardson,P., DOE Joint Genome Institute

Gene Content Analysis

24,119 ESTs from this library were grouped into 7,936 UniGene entries (putative genes) [UniGene build #3, 25-Nov-2010]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).

ESTs TPM   UniGene Entry
23 954 Nve.2508 Transcribed locus.
19 788 Nve.90 Hypothetical protein.
18 746 Nve.2247 Transcribed locus, weakly similar to XP_002736824.1 PREDICTED: endoplasmic reticulum protein ERp29-like [Saccoglossus kowalevskii].
18 746 Nve.204 Hypothetical protein.
18 746 Nve.1775 Hypothetical protein.
17 705 Nve.5739 Hypothetical protein.
17 705 Nve.145 Hypothetical protein.
16 663 Nve.7630 Hypothetical protein.
16 663 Nve.7100 Hypothetical protein.
16 663 Nve.4020 Transcribed locus, moderately similar to XP_001641941.1 predicted protein [Nematostella vectensis].
16 663 Nve.39273 Transcribed locus, moderately similar to XP_003228107.1 PREDICTED: valyl-tRNA synthetase-like [Anolis carolinensis].
16 663 Nve.1805 Transcribed locus, strongly similar to XP_001629510.1 predicted protein [Nematostella vectensis].
16 663 Nve.1745 Hypothetical protein.
15 622 Nve.4921 Transcribed locus.
15 622 Nve.2017 Hypothetical protein.
15 622 Nve.1963 Hypothetical protein.
15 622 Nve.1672 Hypothetical protein.
15 622 Nve.1033 Transcribed locus, strongly similar to XP_001636486.1 predicted protein [Nematostella vectensis].
14 580 Nve.957 Transcribed locus, strongly similar to XP_001623650.1 predicted protein [Nematostella vectensis].
14 580 Nve.9011 Hypothetical protein.
14 580 Nve.7873 Hypothetical protein.
14 580 Nve.721 Hypothetical protein.
14 580 Nve.4964 Hypothetical protein.
14 580 Nve.4343 Transcribed locus, weakly similar to XP_002732156.1 PREDICTED: hypothetical protein, partial [Saccoglossus kowalevskii].
14 580 Nve.3710 Hypothetical protein.
14 580 Nve.361 Hypothetical protein.
14 580 Nve.2516 Hypothetical protein.
14 580 Nve.2405 Hypothetical protein.
14 580 Nve.17213 Hypothetical protein.
14 580 Nve.11743 Hypothetical protein.
14 580 Nve.110 Hypothetical protein.
14 580 Nve.1014 Hypothetical protein.
13 539 Nve.703 Hypothetical protein.
13 539 Nve.5232 Hypothetical protein.
13 539 Nve.4227 Transcribed locus, moderately similar to XP_001636231.1 predicted protein [Nematostella vectensis].
13 539 Nve.3420 Hypothetical protein.
13 539 Nve.1419 Hypothetical protein.
13 539 Nve.12229 Hypothetical protein.
12 498 Nve.8537 Hypothetical protein.
12 498 Nve.6676 Hypothetical protein.
12 498 Nve.4619 Hypothetical protein.
12 498 Nve.4591 Hypothetical protein.
12 498 Nve.4120 Hypothetical protein.
12 498 Nve.3996 Transcribed locus.
12 498 Nve.3950 Hypothetical protein.
12 498 Nve.3647 Hypothetical protein.
12 498 Nve.3111 Hypothetical protein.
12 498 Nve.3072 Hypothetical protein.
12 498 Nve.23214 Transcribed locus.
12 498 Nve.1902 Transcribed locus, strongly similar to XP_001624470.1 predicted protein [Nematostella vectensis].
12 498 Nve.1795 Hypothetical protein.
12 498 Nve.15152 Hypothetical protein.
12 498 Nve.1303 Transcribed locus.
12 498 Nve.1287 Hypothetical protein.
12 498 Nve.1016 Hypothetical protein.
11 456 Nve.9958 Hypothetical protein.
11 456 Nve.9863 Hypothetical protein.
11 456 Nve.8801 Transcribed locus.
11 456 Nve.8620 Hypothetical protein.
11 456 Nve.78 Hypothetical protein.
11 456 Nve.7551 Hypothetical protein.
11 456 Nve.698 Hypothetical protein.
11 456 Nve.6803 Hypothetical protein.
11 456 Nve.6708 Hypothetical protein.
11 456 Nve.4903 Hypothetical protein.
11 456 Nve.4709 Hypothetical protein.
11 456 Nve.467 Hypothetical protein.
11 456 Nve.4076 Hypothetical protein.
11 456 Nve.40521 Transcribed locus.
11 456 Nve.3873 Transcribed locus.
11 456 Nve.3850 Hypothetical protein.
11 456 Nve.3542 Hypothetical protein.
11 456 Nve.3123 Hypothetical protein.
11 456 Nve.278 Hypothetical protein.
11 456 Nve.273 Transcribed locus.
11 456 Nve.2681 Hypothetical protein.
11 456 Nve.2330 Hypothetical protein.
11 456 Nve.2080 Hypothetical protein.
11 456 Nve.1832 Hypothetical protein.
11 456 Nve.1546 Hypothetical protein.
11 456 Nve.14306 Hypothetical protein.
11 456 Nve.12968 Hypothetical protein.
11 456 Nve.1167 Hypothetical protein.
11 456 Nve.1106 Hypothetical protein.
10 415 Nve.8659 Hypothetical protein.
10 415 Nve.8026 Hypothetical protein.
10 415 Nve.7678 Hypothetical protein.
10 415 Nve.7369 Transcribed locus.
10 415 Nve.7282 Hypothetical protein.
10 415 Nve.7003 Transcribed locus, weakly similar to XP_002122239.1 PREDICTED: similar to predicted protein [Ciona intestinalis].
10 415 Nve.699 Hypothetical protein.
10 415 Nve.6868 Hypothetical protein.
10 415 Nve.6673 Hypothetical protein.
10 415 Nve.6458 Transcribed locus.
10 415 Nve.6441 Hypothetical protein.
10 415 Nve.634 Hypothetical protein.
10 415 Nve.582 Transcribed locus, strongly similar to XP_001625623.1 predicted protein [Nematostella vectensis].
10 415 Nve.5438 Transcribed locus.
10 415 Nve.5169 Hypothetical protein.
10 415 Nve.4959 Transcribed locus.

1 2 3 4 5 6 7 8 9 Next> Last>>

Source: NCBI UniGene

EST Sequences

26,327 EST sequences from this library have been submitted to the public sequence database as of 25-Nov-2010.

Source: NCBI GenBank

Click the button to save sequences to a file (FASTA format)



National Center for Biotechnology Information
U.S. National Library of Medicine
8600 Rockville Pike, Bethesda, MD 20894