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An organized view of the transcripome



Library:18019 (dbEST ID)

RIKEN full-length enriched mouse cDNA library, C57BL/6J whole body 12 days embryo

Library Description

Organism:Mus musculus
Strain:C57BL/6J
Developmental stage:12 days embryo
Tissue:whole body

Source: Yoshihide Hayashizaki, The Institute of Physical and Chemical Research (RIKEN)

Gene Content Analysis

4,175 ESTs from this library were grouped into 1,727 UniGene entries (putative genes) [UniGene build #194, 25-Jan-2013]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).

ESTs TPM   UniGene Entry
48 11497 Mm.2423 Collagen, type II, alpha 1.
38 9102 Mm.249555 Collagen, type III, alpha 1.
25 5988 Mm.7248 Solute carrier family 4 (anion exchanger), member 1.
23 5509 Mm.4352 Collagen, type XVIII, alpha 1.
18 4311 Mm.490254 Transmembrane protein 132A.
17 4072 Mm.4691 Nidogen 1.
17 4072 Mm.338690 Solute carrier family 35, member F1.
17 4072 Mm.3196 Alpha glucosidase 2 alpha neutral subunit.
17 4072 Mm.29954 Rho guanine nucleotide exchange factor (GEF) 17.
17 4072 Mm.29564 Matrix metallopeptidase 2.
17 4072 Mm.286375 Elastin microfibril interfacer 1.
16 3832 Mm.5021 Discoidin domain receptor family, member 1.
16 3832 Mm.280103 ATPase, Na+/K+ transporting, alpha 1 polypeptide.
15 3593 Mm.738 Collagen, type IV, alpha 1.
15 3593 Mm.38016 Sterol regulatory element binding factor 2.
15 3593 Mm.260861 Contactin 2.
14 3353 Mm.28420 Valyl-tRNA synthetase.
13 3114 Mm.63979 Angel homolog 1 (Drosophila).
13 3114 Mm.333406 Cyclin D2.
13 3114 Mm.329776 Transmembrane protein 2.
13 3114 Mm.247203 Protocadherin gamma cluster.
13 3114 Mm.193099 Fibronectin 1.
12 2874 Mm.405761 Insulin-like growth factor binding protein 5.
12 2874 Mm.335454 WD repeat domain 6.
12 2874 Mm.295020 Collagen, type XXVI, alpha 1.
12 2874 Mm.253403 Solute carrier family 38, member 10.
12 2874 Mm.235730 RUN and SH3 domain containing 2.
12 2874 Mm.233117 Aldehyde dehydrogenase 18 family, member A1.
12 2874 Mm.22708 Serine (or cysteine) peptidase inhibitor, clade H, member 1.
12 2874 Mm.207683 Glucosamine (N-acetyl)-6-sulfatase.
11 2635 Mm.44876 Tripartite motif-containing 2.
11 2635 Mm.3285 Signal peptide peptidase like 2B.
11 2635 Mm.277792 Collagen, type I, alpha 2.
11 2635 Mm.172 Lysyl oxidase.
10 2395 Mm.29889 Proline-rich coiled-coil 1.
10 2395 Mm.297992 Fibulin 1.
10 2395 Mm.286593 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4.
10 2395 Mm.279923 Neural precursor cell expressed, developmentally down-regulated 4.
10 2395 Mm.271967 LIM and SH3 protein 1.
10 2395 Mm.254515 DiGeorge syndrome critical region gene 2.
10 2395 Mm.227616 SH3 and PX domains 2B.
10 2395 Mm.216227 Casein kinase 1, delta.
9 2156 Mm.68971 Discs, large homolog 5 (Drosophila).
9 2156 Mm.4580 Solute carrier family 4 (anion exchanger), member 2.
9 2156 Mm.443425 Porcupine homolog (Drosophila).
9 2156 Mm.439890 Transient receptor potential cation channel, subfamily M, member 4.
9 2156 Mm.27955 Eukaryotic translation initiation factor 4H.
9 2156 Mm.279194 RNA binding motif protein 10.
9 2156 Mm.265610 Polypyrimidine tract binding protein 1.
9 2156 Mm.22574 Colony stimulating factor 1 receptor.
9 2156 Mm.225096 Integrin alpha 6.
9 2156 Mm.172674 Laminin B1.
9 2156 Mm.16660 Prolyl 4-hydroxylase, beta polypeptide.
8 1916 Mm.4793 Glucosidase, alpha, acid.
8 1916 Mm.39703 Fukutin related protein.
8 1916 Mm.335639 Mesoderm specific transcript.
8 1916 Mm.30158 Fatty acid desaturase 1.
8 1916 Mm.290975 TBC1 domain family, member 9B.
8 1916 Mm.280175 Matrix metallopeptidase 14 (membrane-inserted).
8 1916 Mm.276305 DEAH (Asp-Glu-Ala-His) box polypeptide 30.
8 1916 Mm.272251 Latent transforming growth factor beta binding protein 4.
8 1916 Mm.26646 Integrin alpha 2b.
8 1916 Mm.265716 Fibroblast growth factor receptor 1.
8 1916 Mm.26468 RIKEN cDNA 4632434I11 gene.
8 1916 Mm.249637 Ephrin B3.
8 1916 Mm.23566 WAS protein family, member 2.
8 1916 Mm.211477 Pleckstrin homology-like domain, family B, member 2.
8 1916 Mm.205169 Transmembrane protein 214.
8 1916 Mm.19016 Drebrin 1.
8 1916 Mm.120151 Family with sequence similarity 168, member B.
7 1677 Mm.5048 Minichromosome maintenance deficient 5, cell division cycle 46 (S. cerevisiae).
7 1677 Mm.4871 Tissue inhibitor of metalloproteinase 3.
7 1677 Mm.482727 A disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 12.
7 1677 Mm.4128 AXL receptor tyrosine kinase.
7 1677 Mm.41122 Ring finger protein 40.
7 1677 Mm.3862 Insulin-like growth factor 2.
7 1677 Mm.347607 Thymine DNA glycosylase.
7 1677 Mm.333335 Intraflagellar transport 122.
7 1677 Mm.333189 Solute carrier family 4, sodium bicarbonate cotransporter, member 5.
7 1677 Mm.316553 Lipoma HMGIC fusion partner-like 2.
7 1677 Mm.30012 High density lipoprotein (HDL) binding protein.
7 1677 Mm.28979 Enhancer of mRNA decapping 4.
7 1677 Mm.285785 CTS telomere maintenance complex component 1.
7 1677 Mm.268317 Phosphatidylinositol glycan anchor biosynthesis, class H.
7 1677 Mm.260282 G patch domain containing 8.
7 1677 Mm.236123 Splicing factor 3b, subunit 3.
7 1677 Mm.18845 Superkiller viralicidic activity 2-like (S. cerevisiae).
7 1677 Mm.1500 Minichromosome maintenance deficient 4 homolog (S. cerevisiae).
7 1677 Mm.1213 Mannan-binding lectin serine peptidase 1.
7 1677 Mm.103568 Solute carrier family 38, member 1.
6 1437 Mm.9239 Rho guanine nucleotide exchange factor (GEF) 40.
6 1437 Mm.87312 Glia maturation factor, beta.
6 1437 Mm.5012 SH3-domain binding protein 2.
6 1437 Mm.4628 Sphingomyelin phosphodiesterase 1, acid lysosomal.
6 1437 Mm.423621 CD44 antigen.
6 1437 Mm.391967 Actin, beta.
6 1437 Mm.388249 Protein-O-mannosyltransferase 2.
6 1437 Mm.34126 Serine carboxypeptidase 1.
6 1437 Mm.33808 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2.
6 1437 Mm.334825 Vesicle amine transport protein 1 homolog-like (T. californica).

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Source: NCBI UniGene

EST Sequences

5,479 EST sequences from this library have been submitted to the public sequence database as of 25-Jan-2013.

Source: NCBI GenBank

Click the button to save sequences to a file (FASTA format)

Keywords

  • embryonic tissue
  • fetus
  • C57 mouse
  • enriched

Source: NCBI Clone Registry



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