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An organized view of the transcripome



Library:15476 (dbEST ID)

Lotus corniculatus var. japonicus pods (less than 20 mm in length)

Library Description

Organism:Lotus japonicus
Strain:ecotype Miyakojima MG-20
Developmental stage:pod (less than 20 mm in length)
Tissue:pods

Source: Erika Asamizu, Kazusa DNA Research Institute

Gene Content Analysis

13,261 ESTs from this library were grouped into 5,506 UniGene entries (putative genes) [UniGene build #11, 20-Apr-2013]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).

ESTs TPM   UniGene Entry
131 9879 Lja.8026 Clone JCVI-FLLj-16N13 unknown mRNA.
90 6787 Lja.97 Plasma membrane intrinsic protein homolog.
81 6108 Lja.296 Water-selective transport intrinsic membrane protein 1.
66 4977 Lja.1218 Transcribed locus, strongly similar to NP_200847.1 Elongation factor 1-alpha [Arabidopsis thaliana].
62 4675 Lja.8158 Transcribed locus, strongly similar to NP_176347.1 PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana].
62 4675 Lja.1193 Transcribed locus, weakly similar to XP_003548552.1 PREDICTED: vacuolar-processing enzyme-like [Glycine max].
49 3695 Lja.4352 Transcribed locus.
49 3695 Lja.286 Transcribed locus.
45 3393 Lja.1105 Transcribed locus, strongly similar to XP_003525227.1 PREDICTED: 40S ribosomal protein S2-4-like [Glycine max].
40 3016 Lja.2706 Transcribed locus, strongly similar to XP_003516826.1 PREDICTED: alpha-xylosidase-like [Glycine max].
40 3016 Lja.1266 Clone JCVI-FLLj-14G11 unknown mRNA.
39 2941 Lja.5160 Clone JCVI-FLLj-6A22 unknown mRNA.
38 2866 Lja.2165 Clone JCVI-FLLj-20N9 unknown mRNA.
38 2866 Lja.1403 Clone JCVI-FLLj-14L16 unknown mRNA.
37 2790 Lja.220 Transcribed locus, strongly similar to NP_001237601.1 PRX2 gene product [Glycine max].
36 2715 Lja.2909 Clone JCVI-FLLj-11J1 unknown mRNA.
36 2715 Lja.1563 Clone JCVI-FLLj-19L2 unknown mRNA.
32 2413 Lja.965 Transcribed locus, weakly similar to XP_003598756.1 HAT family dimerization domain containing protein [Medicago truncatula].
32 2413 Lja.3497 Phosphoenolpyruvate carboxylase.
32 2413 Lja.1990 Clone JCVI-FLLj-6F16 unknown mRNA.
31 2338 Lja.894 Clone JCVI-FLLj-23I21 unknown mRNA.
31 2338 Lja.8157 Clone JCVI-FLLj-20H17 unknown mRNA.
31 2338 Lja.6111 Clone JCVI-FLLj-7J1 unknown mRNA.
31 2338 Lja.1441 Transcribed locus, moderately similar to XP_003539684.1 PREDICTED: osmotin-like protein-like [Glycine max].
31 2338 Lja.1365 Transcribed locus, moderately similar to XP_003555525.1 PREDICTED: uncharacterized protein LOC100786500 [Glycine max].
30 2262 Lja.930 Transcribed locus, strongly similar to NP_001235794.1 LOC547643 gene product [Glycine max].
29 2187 Lja.491 Clone JCVI-FLLj-14N15 unknown mRNA.
29 2187 Lja.1388 Clone JCVI-FLLj-14O2 unknown mRNA.
26 1961 Lja.2125 Clone JCVI-FLLj-18F21 unknown mRNA.
23 1734 Lja.8228 Transcribed locus, strongly similar to NP_001105639.1 aquaporin PIP2-7 [Zea mays].
23 1734 Lja.5577 Transcribed locus, moderately similar to NP_195027.1 glycine dehydrogenase [decarboxylating] 2 [Arabidopsis thaliana].
23 1734 Lja.3856 Clone JCVI-FLLj-17A1 unknown mRNA.
23 1734 Lja.1305 Clone JCVI-FLLj-14O24 unknown mRNA.
22 1659 Lja.5411 Clone JCVI-FLLj-20L7 unknown mRNA.
22 1659 Lja.3555 Transcribed locus, moderately similar to XP_003601297.1 Protein argonaute 4A [Medicago truncatula].
22 1659 Lja.1522 Transcribed locus, moderately similar to NP_001173114.1 Os02g0678400 [Oryza sativa Japonica Group].
22 1659 Lja.1308 Transcribed locus, weakly similar to XP_003546588.1 PREDICTED: repetitive proline-rich cell wall protein 2-like [Glycine max].
21 1584 Lja.303 Transcribed locus, moderately similar to NP_187128.1 40S ribosomal protein Sa-2 [Arabidopsis thaliana].
21 1584 Lja.1455 Transcribed locus, moderately similar to XP_003621618.1 Proline dehydrogenase [Medicago truncatula].
21 1584 Lja.1364 Transcribed locus.
20 1508 Lja.385 Transcribed locus, strongly similar to XP_958803.1 polyubiquitin [Neurospora crassa OR74A].
20 1508 Lja.1560 Clone JCVI-FLLj-8G17 unknown mRNA.
20 1508 Lja.1281 Transcribed locus, moderately similar to XP_003524664.1 PREDICTED: photosystem I reaction center subunit III, chloroplastic-like [Glycine max].
20 1508 Lja.1189 Clone JCVI-FLLj-17L9 unknown mRNA.
19 1433 Lja.8009 Transcribed locus, strongly similar to NP_195236.1 aquaporin PIP2-7 [Arabidopsis thaliana].
19 1433 Lja.6913 Clone JCVI-FLLj-12P3 unknown mRNA.
19 1433 Lja.1526 Transcribed locus, weakly similar to XP_003529348.1 PREDICTED: protein E6-like [Glycine max].
19 1433 Lja.1278 Clone JCVI-FLLj-8H8 unknown mRNA.
18 1357 Lja.7333 Transcribed locus, strongly similar to XP_003526442.1 PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Glycine max].
18 1357 Lja.56 Transcribed locus, moderately similar to XP_003612345.1 Seed lipoxygenase [Medicago truncatula].
18 1357 Lja.2784 Transcribed locus.
18 1357 Lja.241 Transcribed locus, strongly similar to NP_001241455.1 uncharacterized protein LOC100778205 [Glycine max].
18 1357 Lja.1635 Clone JCVI-FLLj-22F10 unknown mRNA.
17 1282 Lja.7308 Transcribed locus, strongly similar to XP_003524455.1 PREDICTED: aminopeptidase N-like [Glycine max].
17 1282 Lja.6801 Clone JCVI-FLLj-18P8 unknown mRNA.
17 1282 Lja.419 Clone JCVI-FLLj-16G10 unknown mRNA.
17 1282 Lja.388 Clone JCVI-FLLj-17K20 unknown mRNA.
17 1282 Lja.3012 Clone JCVI-FLLj-23N17 unknown mRNA.
17 1282 Lja.277 Clone JCVI-FLLj-19C16 unknown mRNA.
17 1282 Lja.1825 Transcribed locus, weakly similar to XP_003550713.1 PREDICTED: uncharacterized protein LOC100816395 [Glycine max].
17 1282 Lja.1699 Transcribed locus, strongly similar to NP_001078345.1 S-adenosylmethionine synthase 2 [Arabidopsis thaliana].
17 1282 Lja.1564 Clone JCVI-FLLj-8I16 unknown mRNA.
16 1207 Lja.8355 Transcribed locus, strongly similar to XP_003542496.1 PREDICTED: 60S ribosomal protein L4-1-like [Glycine max].
16 1207 Lja.7280 Transcribed locus, strongly similar to XP_003537655.1 PREDICTED: aconitate hydratase 1-like [Glycine max].
16 1207 Lja.4386 Transcribed locus, strongly similar to NP_188929.1 ATP sulfurylase 1 [Arabidopsis thaliana].
16 1207 Lja.4239 Clone JCVI-FLLj-17C8 unknown mRNA.
16 1207 Lja.278 Clone JCVI-FLLj-21P20 unknown mRNA.
16 1207 Lja.1436 Transcribed locus, moderately similar to XP_002283953.1 PREDICTED: isoflavone reductase homolog [Vitis vinifera].
16 1207 Lja.1389 Clone JCVI-FLLj-4C9 unknown mRNA.
16 1207 Lja.1354 Clone JCVI-FLLj-7O22 unknown mRNA.
15 1131 Lja.982 Transcribed locus, strongly similar to XP_003520277.1 PREDICTED: beta-galactosidase 3-like [Glycine max].
15 1131 Lja.8219 Clone JCVI-FLLj-21P1 unknown mRNA.
15 1131 Lja.6675 Clone JCVI-FLLj-1D20 unknown mRNA.
15 1131 Lja.4150 Clone JCVI-FLLj-4G22 unknown mRNA.
15 1131 Lja.1367 Clone JCVI-FLLj-20D7 unknown mRNA.
15 1131 Lja.1304 Clone JCVI-FLLj-21E19 unknown mRNA.
15 1131 Lja.1219 Transcribed locus, moderately similar to XP_003554195.1 PREDICTED: polygalacturonase inhibitor-like [Glycine max].
14 1056 Lja.975 Transcribed locus, moderately similar to XP_003519003.1 PREDICTED: UDP-glycosyltransferase 85A3-like [Glycine max].
14 1056 Lja.7518 Clone JCVI-FLLj-23F5 unknown mRNA.
14 1056 Lja.6793 Transcribed locus, strongly similar to XP_003519763.1 PREDICTED: UDP-glucuronic acid decarboxylase 1-like [Glycine max].
14 1056 Lja.4012 Transcribed locus, moderately similar to XP_003541354.1 PREDICTED: UPF0420 protein C16orf58 homolog [Glycine max].
14 1056 Lja.3145 Clone JCVI-FLLj-9L11 unknown mRNA.
14 1056 Lja.2805 Clone JCVI-FLLj-19E13 unknown mRNA.
14 1056 Lja.167 Transcribed locus, strongly similar to NP_197716.1 Succinyl-CoA ligase [GDP-forming] subunit alpha-2 [Arabidopsis thaliana].
14 1056 Lja.1358 Clone JCVI-FLLj-12B16 unknown mRNA.
13 980 Lja.991 Clone JCVI-FLLj-9D6 unknown mRNA.
13 980 Lja.7508 Transcribed locus, moderately similar to XP_003539042.1 PREDICTED: uncharacterized protein LOC100817330 [Glycine max].
13 980 Lja.7087 Transcribed locus, moderately similar to XP_003529629.1 PREDICTED: RNA-binding post-transcriptional regulator csx1-like [Glycine max].
13 980 Lja.6520 Transcribed locus, moderately similar to NP_196897.1 chalcone synthase [Arabidopsis thaliana].
13 980 Lja.4314 Clone JCVI-FLLj-7H1 unknown mRNA.
13 980 Lja.3834 Transcribed locus, strongly similar to XP_003530452.1 PREDICTED: importin subunit beta-1-like [Glycine max].
13 980 Lja.2613 Transcribed locus, strongly similar to XP_003547219.1 PREDICTED: pumilio homolog 2-like [Glycine max].
13 980 Lja.2414 Transcribed locus, moderately similar to XP_003621026.1 Epsin-like protein [Medicago truncatula].
13 980 Lja.1371 Clone JCVI-FLLj-15K3 unknown mRNA.
13 980 Lja.1324 Transcribed locus, strongly similar to NP_172750.1 glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) [Arabidopsis thaliana].
12 905 Lja.981 Transcribed locus, weakly similar to XP_003594551.1 Endoribonuclease Dicer [Medicago truncatula].
12 905 Lja.8044 Clone JCVI-FLLj-9M2 unknown mRNA.
12 905 Lja.7920 Clone JCVI-FLLj-19O9 unknown mRNA.
12 905 Lja.7053 Transcribed locus, strongly similar to NP_001242433.1 uncharacterized protein LOC100805001 [Glycine max].
12 905 Lja.5952 Transcribed locus, moderately similar to XP_003554374.1 PREDICTED: uncharacterized protein LOC100806816 [Glycine max].

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Source: NCBI UniGene

EST Sequences

14,287 EST sequences from this library have been submitted to the public sequence database as of 20-Apr-2013.

Source: NCBI GenBank

Click the button to save sequences to a file (FASTA format)

Keywords

  • pod
  • ripening

Source: NCBI Clone Registry



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