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Library:15897 (dbEST ID)

Organism: | Gossypium raimondii |

Developmental stage: | first true leaves |

Tissue: | whole seedlings |

Vector: | pCMV.SPORT-6.1 |

Vector type: | Plasmid |

Cloning site 1: | NotI |

Cloning site 2: | EcoRV |

Lab host: | DH10B |

Library made by Invitrogen with RNA supplied by Wendle lab. Directional cloned into NotI-EV. Colonies plated/picked by AGI. More glycerol clones held in -80.

Source: Rod A. Wing, The University of Arizona

9,593 ESTs from this library were grouped into 2,330 UniGene entries (putative genes) [UniGene build #9, 27-Jan-2010]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).

ESTs | TPM | UniGene Entry | ||
---|---|---|---|---|

222 | 23142 | Gra.1108 | Transcribed locus, strongly similar to XP_002267414.1 PREDICTED: hypothetical protein [Vitis vinifera]. | |

167 | 17409 | Gra.525 | Transcribed locus, strongly similar to XP_002274796.1 PREDICTED: hypothetical protein [Vitis vinifera]. | |

149 | 15532 | Gra.331 | Transcribed locus, strongly similar to NP_565787.1 light-harvesting complex II chlorophyll a/b binding protein 1 [Arabidopsis thaliana]. | |

86 | 8965 | Gra.163 | Transcribed locus, moderately similar to NP_176880.1 ribulose bisphosphate carboxylase small chain 1A [Arabidopsis thaliana]. | |

85 | 8861 | Gra.645 | Transcribed locus, strongly similar to NP_001117276.1 glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) [Arabidopsis thaliana]. | |

68 | 7089 | Gra.2922 | Transcribed locus, moderately similar to NP_850491.1 carbonic anhydrase 1 [Arabidopsis thaliana]. | |

64 | 6672 | Gra.1026 | Transcribed locus, moderately similar to NP_175293.1 putative phosphoethanolamine N-methyltransferase 2 [Arabidopsis thaliana]. | |

63 | 6567 | Gra.1713 | Transcribed locus, strongly similar to XP_002316981.1 predicted protein [Populus trichocarpa]. | |

61 | 6359 | Gra.95 | Transcribed locus, strongly similar to NP_195506.1 glycine hydroxymethyltransferase [Arabidopsis thaliana]. | |

54 | 5629 | Gra.401 | Transcribed locus, moderately similar to XP_002305639.1 anthocyanidin reductase [Populus trichocarpa]. | |

53 | 5525 | Gra.901 | Transcribed locus, moderately similar to NP_564497.1 cysteine proteinase RD21a [Arabidopsis thaliana]. | |

52 | 5421 | Gra.3611 | Transcribed locus, strongly similar to XP_002303791.1 light-harvesting complex I protein Lhca2 [Populus trichocarpa]. | |

52 | 5421 | Gra.2794 | Transcribed locus, moderately similar to NP_190692.1 Naringenin,2-oxoglutarate 3-dioxygenase [Arabidopsis thaliana]. | |

51 | 5316 | Gra.481 | Transcribed locus, moderately similar to NP_850321.1 ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis thaliana]. | |

51 | 5316 | Gra.323 | Transcribed locus, strongly similar to NP_192772.1 chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]. | |

51 | 5316 | Gra.1082 | Transcribed locus, moderately similar to NP_850491.1 carbonic anhydrase 1 [Arabidopsis thaliana]. | |

47 | 4899 | Gra.341 | Transcribed locus, strongly similar to NP_176347.1 light-harvesting complex I chlorophyll a/b binding protein 3 [Arabidopsis thaliana]. | |

45 | 4691 | Gra.653 | Transcribed locus, moderately similar to NP_173034.1 light harvesting complex photosystem II subunit 6 [Arabidopsis thaliana]. | |

45 | 4691 | Gra.313 | Transcribed locus, strongly similar to NP_195773.1 chlorophyll a-b binding protein CP29.1 [Arabidopsis thaliana]. | |

44 | 4587 | Gra.802 | Transcribed locus, moderately similar to XP_002282039.1 PREDICTED: leucoanthocyanidin dioxygenase [Vitis vinifera]. | |

44 | 4587 | Gra.593 | Transcribed locus, strongly similar to NP_565786.1 light-harvesting complex II chlorophyll a/b binding protein 1 [Arabidopsis thaliana]. | |

42 | 4378 | Gra.499 | Transcribed locus, strongly similar to XP_002304909.1 predicted protein [Populus trichocarpa]. | |

40 | 4170 | Gra.2810 | Transcribed locus, moderately similar to XP_002308621.1 predicted protein [Populus trichocarpa]. | |

38 | 3961 | Gra.661 | Transcribed locus, moderately similar to NP_172153.1 oxygen-evolving enhancer protein 2-1 [Arabidopsis thaliana]. | |

38 | 3961 | Gra.241 | Transcribed locus, strongly similar to NP_188060.1 putative peroxisomal (S)-2-hydroxy-acid oxidase 2 [Arabidopsis thaliana]. | |

38 | 3961 | Gra.207 | Transcribed locus, strongly similar to XP_002303821.1 chalcone synthase [Populus trichocarpa]. | |

38 | 3961 | Gra.1845 | Transcribed locus, moderately similar to XP_002306900.1 predicted protein [Populus trichocarpa]. | |

37 | 3857 | Gra.194 | Transcribed locus, strongly similar to NP_568049.1 fructose-bisphosphate aldolase, class I [Arabidopsis thaliana]. | |

36 | 3753 | Gra.1497 | Transcribed locus, moderately similar to NP_568921.1 thiol protease aleurain [Arabidopsis thaliana]. | |

35 | 3648 | Gra.2508 | Transcribed locus, strongly similar to XP_002303821.1 chalcone synthase [Populus trichocarpa]. | |

34 | 3544 | Gra.432 | Transcribed locus, strongly similar to XP_002264019.1 PREDICTED: similar to chalcone synthase [Vitis vinifera]. | |

34 | 3544 | Gra.218 | Transcribed locus, strongly similar to XP_002274942.1 PREDICTED: hypothetical protein [Vitis vinifera]. | |

32 | 3336 | Gra.209 | Transcribed locus, strongly similar to NP_178585.1 photosystem II light harvesting complex protein 2.1 [Arabidopsis thaliana]. | |

30 | 3127 | Gra.2999 | Transcribed locus, strongly similar to XP_958803.1 polyubiquitin [Neurospora crassa OR74A]. | |

30 | 3127 | Gra.2124 | Transcribed locus, strongly similar to XP_958803.1 polyubiquitin [Neurospora crassa OR74A]. | |

29 | 3023 | Gra.2409 | Transcribed locus, moderately similar to NP_001078639.1 glutamine synthetase [Arabidopsis thaliana]. | |

28 | 2919 | Gra.78 | Transcribed locus, strongly similar to NP_200847.1 Elongation factor 1-alpha [Arabidopsis thaliana]. | |

28 | 2919 | Gra.2732 | Transcribed locus, strongly similar to NP_195027.1 glycine dehydrogenase [decarboxylating] 2 [Arabidopsis thaliana]. | |

27 | 2815 | Gra.311 | Transcribed locus, strongly similar to NP_187062.1 glyceraldehyde-3-phosphate dehydrogenase, cytosolic [Arabidopsis thaliana]. | |

27 | 2815 | Gra.2809 | Transcribed locus, weakly similar to XP_002271116.1 PREDICTED: lipid transfer protein [Vitis vinifera]. | |

27 | 2815 | Gra.1484 | Transcribed locus, strongly similar to NP_171751.1 S-adenosylmethionine synthetase 1 [Arabidopsis thaliana]. | |

25 | 2606 | Gra.315 | Transcribed locus, moderately similar to NP_001062631.2 Os09g0133600 [Oryza sativa Japonica Group]. | |

25 | 2606 | Gra.2689 | Transcribed locus, strongly similar to NP_174996.1 glyceraldehyde-3-phosphate dehydrogenase B [Arabidopsis thaliana]. | |

25 | 2606 | Gra.1829 | Transcribed locus, moderately similar to NP_201420.1 ferredoxin--NADP+ reductase [Arabidopsis thaliana]. | |

22 | 2293 | Gra.605 | Transcribed locus, moderately similar to XP_002314004.1 flavonoid 3',5'-hydroxylase [Populus trichocarpa]. | |

22 | 2293 | Gra.3021 | Transcribed locus, moderately similar to NP_190318.1 asparagine synthetase [glutamine-hydrolyzing] [Arabidopsis thaliana]. | |

21 | 2189 | Gra.228 | Transcribed locus, moderately similar to XP_002308580.1 predicted protein [Populus trichocarpa]. | |

21 | 2189 | Gra.162 | Transcribed locus, moderately similar to NP_201420.1 ferredoxin--NADP+ reductase [Arabidopsis thaliana]. | |

21 | 2189 | Gra.1055 | Transcribed locus, moderately similar to XP_002325684.1 predicted protein [Populus trichocarpa]. | |

19 | 1981 | Gra.3053 | Transcribed locus, strongly similar to XP_002304468.1 predicted protein [Populus trichocarpa]. | |

19 | 1981 | Gra.1126 | Transcribed locus, strongly similar to XP_958803.1 polyubiquitin [Neurospora crassa OR74A]. | |

18 | 1876 | Gra.3069 | Transcribed locus, moderately similar to NP_196867.1 magnesium chelatase subunit H [Arabidopsis thaliana]. | |

18 | 1876 | Gra.2958 | Transcribed locus, strongly similar to NP_001117503.1 phosphoglycerate kinase [Arabidopsis thaliana]. | |

18 | 1876 | Gra.2935 | Transcribed locus, moderately similar to NP_172405.1 RNA binding protein [Arabidopsis thaliana]. | |

18 | 1876 | Gra.2882 | Transcribed locus, moderately similar to NP_568049.1 fructose-bisphosphate aldolase, class I [Arabidopsis thaliana]. | |

18 | 1876 | Gra.2808 | Transcribed locus, moderately similar to XP_002307752.1 predicted protein [Populus trichocarpa]. | |

18 | 1876 | Gra.2747 | Transcribed locus, strongly similar to NP_195761.1 Pyridoxal biosynthesis protein PDX1.3 [Arabidopsis thaliana]. | |

18 | 1876 | Gra.2608 | Transcribed locus, moderately similar to XP_002283209.1 PREDICTED: hypothetical protein [Vitis vinifera]. | |

18 | 1876 | Gra.2441 | Transcribed locus, strongly similar to NP_200230.1 protochlorophyllide reductase A [Arabidopsis thaliana]. | |

18 | 1876 | Gra.2398 | Transcribed locus, strongly similar to NP_174486.1 phosphoribulokinase [Arabidopsis thaliana]. | |

18 | 1876 | Gra.2009 | Transcribed locus, strongly similar to NP_171751.1 S-adenosylmethionine synthetase 1 [Arabidopsis thaliana]. | |

18 | 1876 | Gra.133 | Transcribed locus, strongly similar to XP_002303791.1 light-harvesting complex I protein Lhca2 [Populus trichocarpa]. | |

18 | 1876 | Gra.1322 | Transcribed locus, moderately similar to NP_181187.1 fructose-bisphosphate aldolase, class I [Arabidopsis thaliana]. | |

18 | 1876 | Gra.1042 | Transcribed locus, strongly similar to NP_190331.3 chlorophyll a-b binding protein 4 [Arabidopsis thaliana]. | |

17 | 1772 | Gra.690 | Transcribed locus, strongly similar to NP_200238.1 light-harvesting chlorophyll B-binding protein 3 [Arabidopsis thaliana]. | |

17 | 1772 | Gra.507 | Transcribed locus, strongly similar to NP_191253.1 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase [Arabidopsis thaliana]. | |

17 | 1772 | Gra.456 | Transcribed locus, moderately similar to NP_201203.2 inositol polyphosphate 1-phosphatase [Arabidopsis thaliana]. | |

17 | 1772 | Gra.2991 | Transcribed locus, weakly similar to XP_002312978.1 predicted protein [Populus trichocarpa]. | |

17 | 1772 | Gra.2469 | Transcribed locus, moderately similar to XP_002284659.1 PREDICTED: hypothetical protein [Vitis vinifera]. | |

17 | 1772 | Gra.1993 | Transcribed locus, strongly similar to XP_001691876.1 alpha tubulin 1 [Chlamydomonas reinhardtii]. | |

17 | 1772 | Gra.1858 | Transcribed locus, moderately similar to NP_565176.1 14-3-3-like protein GF14 omega [Arabidopsis thaliana]. | |

16 | 1668 | Gra.725 | Transcribed locus, moderately similar to XP_002285325.1 PREDICTED: hypothetical protein [Vitis vinifera]. | |

16 | 1668 | Gra.599 | Transcribed locus, strongly similar to NP_196528.1 malate dehydrogenase [Arabidopsis thaliana]. | |

16 | 1668 | Gra.2947 | Transcribed locus, moderately similar to NP_566880.1 thiol protease aleurain-like protein [Arabidopsis thaliana]. | |

16 | 1668 | Gra.2842 | Transcribed locus, weakly similar to NP_201042.2 plant invertase/pectin methylesterase inhibitor domain-containing protein [Arabidopsis thaliana]. | |

16 | 1668 | Gra.2807 | Transcribed locus, moderately similar to XP_002300509.1 predicted protein [Populus trichocarpa]. | |

16 | 1668 | Gra.2729 | Transcribed locus, moderately similar to XP_002307539.1 predicted protein [Populus trichocarpa]. | |

16 | 1668 | Gra.2691 | Transcribed locus, strongly similar to NP_195236.1 aquaporin PIP2-7 [Arabidopsis thaliana]. | |

16 | 1668 | Gra.2551 | Transcribed locus, moderately similar to NP_001042028.1 Os01g0149800 [Oryza sativa Japonica Group]. | |

16 | 1668 | Gra.2368 | Transcribed locus, moderately similar to XP_002298827.1 predicted protein [Populus trichocarpa]. | |

16 | 1668 | Gra.1041 | Transcribed locus, strongly similar to XP_002301067.1 2-dehydro-3-deoxyphosphoheptonate aldolase/ 3-deoxy-d-arabino-heptulosonate 7-phosphate synthetase [Populus trichocarpa]. | |

15 | 1564 | Gra.601 | Transcribed locus, moderately similar to NP_181254.1 aquaporin PIP2-2 [Arabidopsis thaliana]. | |

15 | 1564 | Gra.3001 | Transcribed locus, moderately similar to NP_568166.1 2-Cys peroxiredoxin BAS1-like protein [Arabidopsis thaliana]. | |

15 | 1564 | Gra.2956 | Transcribed locus, strongly similar to XP_002280604.1 PREDICTED: hypothetical protein [Vitis vinifera]. | |

15 | 1564 | Gra.2567 | Transcribed locus, moderately similar to NP_566528.1 post-illumination chlorophyll fluorescence increase protein [Arabidopsis thaliana]. | |

15 | 1564 | Gra.2126 | Transcribed locus, weakly similar to XP_002312379.1 leucoanthocyanidin reductase [Populus trichocarpa]. | |

15 | 1564 | Gra.1666 | Transcribed locus, strongly similar to NP_001031791.1 catalase 2 [Arabidopsis thaliana]. | |

14 | 1459 | Gra.872 | Transcribed locus, strongly similar to NP_176968.1 hydroxypyruvate reductase [Arabidopsis thaliana]. | |

14 | 1459 | Gra.3558 | Transcribed locus, moderately similar to XP_002312379.1 leucoanthocyanidin reductase [Populus trichocarpa]. | |

14 | 1459 | Gra.3057 | Transcribed locus, moderately similar to XP_002275624.1 PREDICTED: hypothetical protein [Vitis vinifera]. | |

14 | 1459 | Gra.301 | Transcribed locus, strongly similar to XP_002273346.1 PREDICTED: hypothetical protein [Vitis vinifera]. | |

14 | 1459 | Gra.2961 | Transcribed locus, moderately similar to XP_002320487.1 1-aminocyclopropane-1-carboxylate [Populus trichocarpa]. | |

14 | 1459 | Gra.2791 | Transcribed locus, strongly similar to NP_172801.1 glyceraldehyde 3-phosphate dehydrogenase [Arabidopsis thaliana]. | |

14 | 1459 | Gra.2780 | Transcribed locus, strongly similar to NP_195235.1 catalase 2 [Arabidopsis thaliana]. | |

14 | 1459 | Gra.2631 | Transcribed locus, strongly similar to NP_177587.1 geranylgeranyl diphosphate reductase [Arabidopsis thaliana]. | |

14 | 1459 | Gra.2436 | Transcribed locus, moderately similar to XP_002317838.1 caffeic acid 3-O-methyltransferase [Populus trichocarpa]. | |

14 | 1459 | Gra.1533 | Transcribed locus, strongly similar to XP_002328996.1 predicted protein [Populus trichocarpa]. | |

14 | 1459 | Gra.1016 | Transcribed locus, strongly similar to NP_181192.1 bifunctional enolase 2/transcriptional activator [Arabidopsis thaliana]. | |

13 | 1355 | Gra.994 | Transcribed locus, weakly similar to NP_181259.1 ribonucleoprotein [Arabidopsis thaliana]. | |

13 | 1355 | Gra.912 | Transcribed locus, strongly similar to XP_001691876.1 alpha tubulin 1 [Chlamydomonas reinhardtii]. |

Source: NCBI UniGene

31,153 EST sequences from this library have been submitted to the public sequence database as of 27-Jan-2010.

Source: NCBI GenBank

Click the button to save sequences to a file (FASTA format)

- whole plant
- seedling

Source: NCBI Clone Registry

A global assembly of cotton ESTs. Udall JA, et al., Genome Res 16, 441-450 (2006).