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An organized view of the transcripome



Library:9685 (dbEST ID)

Normalized Chicken Pituitary/Hypothalamus/Pineal Library

Library Description

Organism:Gallus gallus
Strain:Commercial broiler chicken
Developmental stage:Embryonic (d12,d14,d19); post-hatch (w1,w3,w5,w7,w9)
Sex:Male and Female
Tissue:Pituitary Gland/Hypothalamus/Pineal Gland
Vector:pCMVSPORT6
Lab host:E. Coli EMDH10B

Library made from equivalent pools of total RNA isolated from each tissue at different ages. Single pass sequencing from 5'-end

Source: Larry A. Cogburn, University of Delaware

Gene Content Analysis

3,952 ESTs from this library were grouped into 2,121 UniGene entries (putative genes) [UniGene build #46, 18-Aug-2012]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).

ESTs TPM   UniGene Entry
236 59717 Gga.6271 Proopiomelanocortin.
163 41245 Gga.48744 Growth hormone 1.
117 29605 Gga.19002 Finished cDNA, clone ChEST566p4.
62 15688 Gga.1802 Prolactin.
38 9615 Gga.1803 Proteolipid protein 1 (Pelizaeus-Merzbacher disease, spastic paraplegia 2, uncomplicated).
37 9362 Gga.35012 Finished cDNA, clone ChEST559b14.
36 9109 Gga.6383 Glyceraldehyde-3-phosphate dehydrogenase.
30 7591 Gga.2551 Lactotransferrin.
26 6579 Gga.2913 Myelin basic protein.
21 5314 Gga.4414 CD74 molecule, major histocompatibility complex, class II invariant chain.
18 4555 Gga.6076 Actin, beta.
18 4555 Gga.4390 Ferritin, heavy polypeptide 1.
18 4555 Gga.34328 Eukaryotic translation elongation factor 1 alpha 1.
16 4049 Gga.4982 Aldolase C, fructose-bisphosphate.
16 4049 Gga.4777 Uncharacterized LOC100859882.
16 4049 Gga.20099 Fused in sarcoma.
15 3796 Gga.39142 Ubiquitin C.
15 3796 Gga.1815 Tubulin, beta 2B class IIb.
14 3543 Gga.4896 Glutathione peroxidase 3 (plasma).
14 3543 Gga.33624 Ribosomal protein, large, P0.
13 3289 Gga.33759 Eukaryotic translation elongation factor 1 alpha 2.
13 3289 Gga.2613 Secreted protein, acidic, cysteine-rich (osteonectin).
13 3289 Gga.1171 Lymphocyte antigen 6 complex, locus E.
12 3036 Gga.6482 Heat shock protein 90kDa alpha (cytosolic), class A member 1.
12 3036 Gga.4403 Prosaposin.
11 2783 Gga.34355 Ribosomal protein SA.
10 2530 Gga.4555 Heat shock 70kDa protein 8.
10 2530 Gga.4523 Ribosomal protein L4.
10 2530 Gga.4327 Eukaryotic translation elongation factor 2.
10 2530 Gga.34313 Apolipoprotein A-I.
10 2530 Gga.11685 Calmodulin 2 (phosphorylase kinase, delta).
9 2277 Gga.9467 Integral membrane protein 2B.
9 2277 Gga.9346 Vimentin.
9 2277 Gga.4580 Eukaryotic translation initiation factor 4A2.
9 2277 Gga.38 Ig rearranged light-chain mRNA C-region.
9 2277 Gga.1806 SOUL protein.
8 2024 Gga.832 Purpurin.
8 2024 Gga.38540 Finished cDNA, clone ChEST986e23.
8 2024 Gga.3486 Ribosomal protein L6.
8 2024 Gga.31960 Tubulin, beta 3.
8 2024 Gga.2844 Stathmin 1.
7 1771 Gga.8606 Phosphoglycerate kinase 1.
7 1771 Gga.6033 Phosphoglycerate mutase 1 (brain).
7 1771 Gga.5058 Cystatin C.
7 1771 Gga.4924 MHC class II beta chain.
7 1771 Gga.48777 Transcribed locus, strongly similar to NP_001026269.1 pro-opiomelanocortin precursor [Gallus gallus].
7 1771 Gga.4548 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5.
7 1771 Gga.43354 Tryptophan hydroxylase 1.
7 1771 Gga.38987 Calreticulin-like.
7 1771 Gga.22905 Tubulin, beta 2C.
7 1771 Gga.1585 Stathmin-like 2.
7 1771 Gga.1383 Enolase 1, (alpha).
6 1518 Gga.990 Ribosomal protein L3.
6 1518 Gga.7066 Guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1.
6 1518 Gga.4800 Phosphatidylethanolamine binding protein 1.
6 1518 Gga.4613 Amyloid beta (A4) precursor protein.
6 1518 Gga.4149 Lactate dehydrogenase B.
6 1518 Gga.22609 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide.
5 1265 Gga.8376 Small nuclear ribonucleoprotein D3 polypeptide 18kDa.
5 1265 Gga.730 Glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1).
5 1265 Gga.7240 Cathepsin A.
5 1265 Gga.4978 Calbindin 2, 29kDa (calretinin).
5 1265 Gga.4861 ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1.
5 1265 Gga.4793 Integral membrane protein 2A.
5 1265 Gga.4579 Tubulin, beta class I.
5 1265 Gga.4420 Reticulon 1.
5 1265 Gga.43416 Actin, beta.
5 1265 Gga.4328 Insulin-like growth factor binding protein 7.
5 1265 Gga.423 Clusterin.
5 1265 Gga.4219 Heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa).
5 1265 Gga.39460 Tubulin, alpha 1c.
5 1265 Gga.3382 Peptidylprolyl isomerase B (cyclophilin B).
5 1265 Gga.3346 Superoxide dismutase 1, soluble.
5 1265 Gga.22131 Heterogeneous nuclear ribonucleoprotein A2/B1.
5 1265 Gga.2092 Parathymosin.
5 1265 Gga.1821 Acetylserotonin O-methyltransferase.
5 1265 Gga.1797 Septin 5.
5 1265 Gga.1238 Adducin 1 (alpha).
5 1265 Gga.12250 Tumor suppressor candidate 3.
5 1265 Gga.10045 Valosin containing protein.
4 1012 Gga.9896 Septin 2-like.
4 1012 Gga.7507 ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1.
4 1012 Gga.7308 Transcribed locus, moderately similar to NP_001002131.1 26S proteasome non-ATPase regulatory subunit 8 [Danio rerio].
4 1012 Gga.5494 Carboxypeptidase E.
4 1012 Gga.5470 Chromatin modifying protein 5.
4 1012 Gga.4847 Nucleophosmin (nucleolar phosphoprotein B23, numatrin).
4 1012 Gga.4834 Clathrin, light chain A.
4 1012 Gga.4770 H3 histone, family 3C.
4 1012 Gga.4642 Sorting nexin 1.
4 1012 Gga.4638 High mobility group box 1.
4 1012 Gga.4438 Cell division cycle 42 (GTP binding protein, 25kDa).
4 1012 Gga.4299 Pyruvate kinase, muscle.
4 1012 Gga.42673 Cold inducible RNA binding protein.
4 1012 Gga.4138 Eukaryotic translation initiation factor 4 gamma, 2.
4 1012 Gga.39856 Actin, gamma 1.
4 1012 Gga.39023 Basigin (Ok blood group).
4 1012 Gga.38982 Rho GDP dissociation inhibitor (GDI) alpha.
4 1012 Gga.3876 ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2.
4 1012 Gga.3569 Dihydropyrimidinase-like 2.
4 1012 Gga.35414 Transcribed locus, strongly similar to XP_001232615.1 PREDICTED: neurofilament light polypeptide isoform 1 [Gallus gallus].

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Source: NCBI UniGene

EST Sequences

4,609 EST sequences from this library have been submitted to the public sequence database as of 18-Aug-2012.

Source: NCBI GenBank

Click the button to save sequences to a file (FASTA format)

Keywords

  • normalized

Source: NCBI Clone Registry



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