Skip Nav

An organized view of the transcripome



Library:17066 (dbEST ID)

LIB30321

Library Description

Organism:Canis lupus familiaris
Tissue:lymph node
Vector:pCMV-Sport6
Cloning site 1:NotI
Cloning site 2:SalI
Lab host:DH10B

barcode 460

Source: Nick Staten

Gene Content Analysis

3,285 ESTs from this library were grouped into 1,609 UniGene entries (putative genes) [UniGene build #25, 22-Sep-2012]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).

ESTs TPM   UniGene Entry
138 42009 Cfa.40263 Immunoglobulin lambda-like polypeptide 5-like.
36 10959 Cfa.47716 Thymosin beta-4-like.
34 10350 Cfa.29176 Eukaryotic translation elongation factor 1 alpha 1.
34 10350 Cfa.1333 CD74 molecule, major histocompatibility complex, class II invariant chain.
32 9741 Cfa.29179 Beta-2-microglobulin.
30 9132 Cfa.142 Immunoglobulin J polypeptide, linker protein for immunoglobulin alpha and mu polypeptides.
27 8219 Cfa.39145 60S acidic ribosomal protein P1-like.
26 7915 Cfa.39098 Ribosomal protein L12.
24 7306 Cfa.6456 MHC class II DR alpha chain.
24 7306 Cfa.1288 Ribosomal protein S14.
22 6697 Cfa.6148 MHC class I DLA-88.
22 6697 Cfa.40191 Ribosomal protein L13a.
20 6088 Cfa.39575 Ribosomal protein S9.
20 6088 Cfa.26104 40S ribosomal protein S2-like.
19 5784 Cfa.9093 Ribosomal protein S19.
18 5479 Cfa.39669 Transcribed locus, strongly similar to NP_035421.2 60S ribosomal protein L7 [Mus musculus].
18 5479 Cfa.3478 Immunoglobulin gamma heavy chain C.
18 5479 Cfa.21381 Complement factor D (adipsin).
17 5175 Cfa.46253 Immunoglobulin gamma heavy chain B.
17 5175 Cfa.44607 Ribosomal protein L18a.
17 5175 Cfa.39143 Ribosomal protein S11.
16 4871 Cfa.7387 Nuclear VCP-like.
16 4871 Cfa.39577 Ribosomal protein S25.
16 4871 Cfa.39481 Tumor protein, translationally-controlled 1.
15 4566 Cfa.47841 Ribosomal protein L19.
15 4566 Cfa.39464 Ribosomal protein L11.
14 4262 Cfa.4481 Ribosomal protein S23.
14 4262 Cfa.44518 Clone V4-3 immunoglobulin heavy chain V region.
13 3957 Cfa.40604 Pallidin homolog (mouse).
13 3957 Cfa.39589 Ribosomal protein L21.
13 3957 Cfa.3547 Ribosomal protein L23.
13 3957 Cfa.10936 Ribosomal protein S16.
12 3653 Cfa.39611 Ribosomal protein L6.
12 3653 Cfa.39497 Transcribed locus, strongly similar to NP_058847.1 40S ribosomal protein S15 [Rattus norvegicus].
12 3653 Cfa.39206 Transcribed locus, strongly similar to NP_001007480.1 60S ribosomal protein L4 [Gallus gallus].
12 3653 Cfa.312 Ribosomal protein L9.
12 3653 Cfa.28061 Ribosomal protein L32.
12 3653 Cfa.16493 Ribosomal protein S20.
12 3653 Cfa.10190 Ribosomal protein S6.
11 3349 Cfa.45001 Ribosomal protein S13.
11 3349 Cfa.40738 Ribosomal protein L7a.
11 3349 Cfa.40260 Immunoglobulin mu heavy chain variable region.
11 3349 Cfa.40197 Transcribed locus, strongly similar to NP_000981.1 60S ribosomal protein L27a [Homo sapiens].
11 3349 Cfa.18984 MHC class II DLA DRB1 beta chain.
10 3044 Cfa.704 Ribosomal protein L35a.
10 3044 Cfa.39116 Ribosomal protein L14.
10 3044 Cfa.39102 Transcribed locus, strongly similar to NP_990284.1 ubiquitin-40S ribosomal protein S27a [Gallus gallus].
10 3044 Cfa.29550 Major histocompatibility complex, class II, DQ beta 1.
10 3044 Cfa.284 Ribosomal protein L10a.
10 3044 Cfa.17735 Actin, beta.
9 2740 Cfa.559 Eukaryotic translation elongation factor 1 beta 2.
9 2740 Cfa.47879 Transcribed locus, strongly similar to NP_035430.1 40S ribosomal protein S7 [Mus musculus].
9 2740 Cfa.47838 Ribosomal protein L31.
9 2740 Cfa.47654 Transcribed locus, strongly similar to NP_058834.1 40S ribosomal protein SA [Rattus norvegicus].
9 2740 Cfa.40242 Ribosomal protein L34.
9 2740 Cfa.39649 Ribosomal protein S24.
9 2740 Cfa.38608 Ferritin, heavy polypeptide 1.
9 2740 Cfa.33940 Immunoglobulin alpha heavy chain constant regin variant A (IGHA).
9 2740 Cfa.29059 Ribosomal protein S4, X-linked.
8 2435 Cfa.791 Ribosomal protein L24.
8 2435 Cfa.6072 Chemokine (C-C motif) ligand 21.
8 2435 Cfa.4446 Ribosomal protein L8.
8 2435 Cfa.40324 Complement component 1, q subcomponent, C chain.
8 2435 Cfa.4007 Ribosomal protein S5.
8 2435 Cfa.39919 Ribosomal protein S12.
8 2435 Cfa.39136 Ribosomal protein S8.
8 2435 Cfa.3552 Ubiquitin A-52 residue ribosomal protein fusion product 1.
8 2435 Cfa.3545 Ribosomal protein L29.
8 2435 Cfa.3544 Ribosomal protein S3A.
8 2435 Cfa.26815 Ribosomal protein L30.
8 2435 Cfa.1477 Ribosomal protein S3.
7 2131 Cfa.47926 Transcribed locus, strongly similar to NP_997927.1 40S ribosomal protein S15a [Danio rerio].
7 2131 Cfa.47843 Thymosin beta-4-like.
7 2131 Cfa.44524 Ribosomal protein L17.
7 2131 Cfa.4432 Ribosomal protein L13.
7 2131 Cfa.40418 60S ribosomal protein L23a-like.
7 2131 Cfa.40327 Prothymosin, alpha.
7 2131 Cfa.39179 Ribosomal protein L18.
7 2131 Cfa.39144 Ribosomal protein S17.
7 2131 Cfa.15305 Lysozyme.
6 1826 Cfa.5955 CD5 molecule-like.
6 1826 Cfa.47855 Transcribed locus, moderately similar to XP_003909210.1 PREDICTED: uncharacterized protein LOC101006133 [Papio anubis].
6 1826 Cfa.47700 Ribosomal protein L10.
6 1826 Cfa.44597 GNAS complex locus.
6 1826 Cfa.43079 Clone DD29 immunoglobulin heavy chain variable region.
6 1826 Cfa.40565 Ribosomal protein, large, P2.
6 1826 Cfa.40285 Transcribed locus, strongly similar to NP_031501.1 60S acidic ribosomal protein P0 [Mus musculus].
6 1826 Cfa.39694 Signal sequence receptor, delta.
6 1826 Cfa.39159 Ribosomal protein L28.
6 1826 Cfa.39130 Ribosomal protein S26.
6 1826 Cfa.3259 Peptidylprolyl isomerase A (cyclophilin A) pseudogene.
6 1826 Cfa.28035 Ribosomal protein L27.
6 1826 Cfa.20843 O-linked N-acetylglucosamine (GlcNAc) transferase.
5 1522 Cfa.6430 Ribosomal protein S18.
5 1522 Cfa.40506 60S ribosomal protein L39-like.
5 1522 Cfa.40258 Transcribed locus, weakly similar to XP_003339903.1 PREDICTED: ig kappa chain V-II region RPMI 6410-like [Monodelphis domestica].
5 1522 Cfa.40245 Insulin-like growth factor binding protein 7.
5 1522 Cfa.40179 Ribosomal protein S27.
5 1522 Cfa.39632 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed.
5 1522 Cfa.39460 Ribosomal protein S10.

1 2 3 4 5 6 7 8 9 Next> Last>>

Source: NCBI UniGene

EST Sequences

4,309 EST sequences from this library have been submitted to the public sequence database as of 22-Sep-2012.

Source: NCBI GenBank

Click the button to save sequences to a file (FASTA format)

Keywords

  • lymphoreticular
  • unknown developmental stage

Source: NCBI Clone Registry



National Center for Biotechnology Information
U.S. National Library of Medicine
8600 Rockville Pike, Bethesda, MD 20894