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An organized view of the transcripome



Library:10175 (dbEST ID)

unpublished oligo-capped cDNA library, C. elegans L1 stage

Library Description

Organism:Caenorhabditis elegans
Strain:N2
Developmental stage:L1
Sex:hermaphrodite
Tissue:whole animal

Source: Tadasu Shin-i, National Institute of Genetics

Gene Content Analysis

48,947 ESTs from this library were grouped into 5,678 UniGene entries (putative genes) [UniGene build #52, 25-Aug-2012]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).

ESTs TPM   UniGene Entry
939 19184 Cel.22703 Protein EEF-1A.1.
889 18163 Cel.17884 Transcribed locus, strongly similar to NP_507998.1 Protein F53F8.5 [Caenorhabditis elegans].
730 14914 Cel.17786 Protein ALH-8.
660 13484 Cel.17657 Protein EGL-21.
654 13361 Cel.17797 Protein PMT-1.
618 12626 Cel.22874 Protein H28O16.1.
610 12462 Cel.6006 Protein PCK-2.
573 11707 Cel.38639 Protein ATP-2.
502 10256 Cel.17955 Protein ANT-1.1.
479 9786 Cel.18040 Protein ICL-1.
472 9643 Cel.17843 Protein CTS-1.
413 8438 Cel.38673 Protein EEF-2.
393 8029 Cel.17795 Transcribed locus, strongly similar to NP_492457.1 Elongation FacTor family member (eft-2) [Caenorhabditis elegans].
355 7253 Cel.17615 Protein ACT-4.
332 6783 Cel.38640 Protein ZTF-7.
320 6538 Cel.17789 Protein DAF-21.
257 5251 Cel.7140 Protein T07A9.9.
235 4801 Cel.17753 Protein PAB-1.
225 4597 Cel.17802 Protein ACS-19.
214 4372 Cel.17687 Protein C37H5.6.
203 4147 Cel.21361 Protein IFB-2.
200 4086 Cel.6339 Protein IFC-1.
190 3882 Cel.38041 Protein B0511.6.
188 3841 Cel.17685 Protein ALH-1.
179 3657 Cel.22476 Protein CCT-4.
179 3657 Cel.17068 Protein ACS-2.
177 3616 Cel.18209 Protein F01G4.6.
173 3534 Cel.5626 Protein UCR-1.
167 3412 Cel.23484 Protein SODH-1.
165 3371 Cel.22455 Protein SCA-1.
164 3351 Cel.17861 Protein ABCF-2.
164 3351 Cel.17034 Protein UNC-15.
150 3065 Cel.17877 Protein C44B7.10.
148 3024 Cel.8819 Protein BRP-1.
148 3024 Cel.18128 Protein CCT-5.
147 3003 Cel.38647 Polyadenylate-binding protein.
142 2901 Cel.5111 Protein HSP-1.
142 2901 Cel.20069 Protein RLA-0.
138 2819 Cel.17737 Protein K08D12.6.
131 2676 Cel.9096 Protein T22F3.11.
130 2656 Cel.22706 Protein R02F2.1.
129 2636 Cel.17743 Protein INOS-1.
127 2595 Cel.17808 Protein GDH-1.
126 2574 Cel.38047 Protein ANT-1.1.
123 2513 Cel.17893 Protein CAB-1.
117 2390 Cel.19324 Protein UNC-54.
113 2309 Cel.17542 Protein NUO-4.
113 2309 Cel.17047 Protein CCT-1.
112 2288 Cel.9027 Protein ASNS-2.
112 2288 Cel.10814 Protein ASP-1.
105 2145 Cel.35556 Transcribed locus, strongly similar to NP_006961.1 cytochrome c oxidase subunit I [Caenorhabditis elegans].
104 2125 Cel.17823 Protein FUM-1.
103 2104 Cel.8693 Protein K08F8.1.
99 2023 Cel.20015 Protein MYO-2.
99 2023 Cel.17885 Protein GFI-1.
96 1961 Cel.38650 Protein VHA-13.
95 1941 Cel.18335 Transcribed locus, strongly similar to NP_006961.1 cytochrome c oxidase subunit I [Caenorhabditis elegans].
94 1920 Cel.18027 Protein EGL-3.
92 1880 Cel.17681 Protein F58E10.3.
91 1859 Cel.17836 Protein MYO-1.
90 1839 Cel.17790 Protein C53H9.2.
88 1798 Cel.8688 Protein K12H4.7.
88 1798 Cel.22702 Protein EEF-1A.2.
88 1798 Cel.18353 Protein PDI-2.
87 1777 Cel.7612 Protein AHCY-1.
86 1757 Cel.8729 Protein LPD-7.
84 1716 Cel.22449 Protein Y82E9BR.3.
82 1675 Cel.7130 Protein F44E5.4.
82 1675 Cel.33026 Protein F57F4.4.
81 1655 Cel.8142 Protein C01B10.6.
79 1614 Cel.6164 Protein APL-1.
78 1594 Cel.8314 Protein F45D11.16.
77 1573 Cel.17634 Protein Y54G2A.11.
76 1553 Cel.5671 Protein PCK-1.
76 1553 Cel.23306 Protein RPL-10.
76 1553 Cel.17821 Protein UBQ-1.
73 1491 Cel.5778 Protein GOT-2.2.
73 1491 Cel.38720 Protein F53F10.2.
73 1491 Cel.23532 Protein VHA-12.
72 1471 Cel.19780 Protein PCCB-1.
72 1471 Cel.17663 Protein T12G3.1.
71 1451 Cel.17292 Protein PDI-3.
70 1430 Cel.8017 Protein VHA-6.
69 1410 Cel.8282 Protein UBQ-2.
69 1410 Cel.17595 Protein VHA-15.
68 1389 Cel.18035 Protein ENOL-1.
67 1369 Cel.9272 Protein RPL-7A.
67 1369 Cel.8781 Protein TKT-1.
66 1348 Cel.17810 Protein POD-2.
65 1328 Cel.17880 Protein FAT-3.
65 1328 Cel.10737 Protein TBB-2.
64 1308 Cel.9049 Protein EEF-1G.
64 1308 Cel.5232 Protein IDA-1.
64 1308 Cel.20547 Protein RPS-8.
64 1308 Cel.16886 Protein LFI-1.
64 1308 Cel.139 Protein PQN-59.
62 1267 Cel.23213 Transcribed locus, strongly similar to NP_740834.1 Protein F53F10.2, isoform b [Caenorhabditis elegans].
62 1267 Cel.17566 Protein D2030.2.
62 1267 Cel.13229 Protein COL-117.
61 1246 Cel.8011 Protein GAS-1.

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Source: NCBI UniGene

EST Sequences

56,053 EST sequences from this library have been submitted to the public sequence database as of 25-Aug-2012.

Source: NCBI GenBank

Click the button to save sequences to a file (FASTA format)

Keywords

  • L1 larva

Source: NCBI Clone Registry



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