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An organized view of the transcripome



Library:17886 (dbEST ID)

GC_BGC-04

Library Description

Organism:Bos taurus
Strain:Crossbred x Angus
Developmental stage:Calf, 6 months old
Sex:female
Organ:Liver
Tissue:Liver
Vector:pCMV SPORT 6.0
Cloning site 1:SalI (5' end of cDNA)
Cloning site 2:NotI (3' end of cDNA)
Lab host:ElectroMAX DH10B T1 Phage-Resistant Cells

Source: Robert Kirkpatrick, BC Cancer Agency

Gene Content Analysis

35,426 ESTs from this library were grouped into 8,350 UniGene entries (putative genes) [UniGene build #101, 19-Jun-2012]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).

ESTs TPM   UniGene Entry
400 11291 Bt.106068 Transcribed locus, strongly similar to NP_776581.1 sperm protamine P1 [Bos taurus].
312 8807 Bt.109753 Tubulin, alpha 3e.
248 7001 Bt.5321 Ferritin, heavy polypeptide 1.
198 5589 Bt.111403 Ubiquitin B.
181 5109 Bt.91145 Insulin-like 3 (Leydig cell).
179 5053 Bt.49064 Orosomucoid 1.
175 4940 Bt.12553 Haptoglobin.
159 4488 Bt.5332 Y box binding protein 1.
156 4404 Bt.227 Glutathione S-transferase alpha 3.
152 4291 Bt.8125 Ribosomal protein, large, P1.
134 3783 Bt.54338 Heat shock protein, alpha-crystallin-related, B9.
129 3641 Bt.13691 Ubiquitin A-52 residue ribosomal protein fusion product 1.
127 3585 Bt.93361 Transcribed locus, strongly similar to XP_003582124.1 PREDICTED: spermatid nuclear transition protein 3-like [Bos taurus].
121 3416 Bt.49234 Glutathione peroxidase 4.
112 3162 Bt.104207 Transcribed locus, strongly similar to XP_003585592.1 PREDICTED: spermatid nuclear transition protein 3-like [Bos taurus].
110 3105 Bt.5304 Glutathione S-transferase mu 3 (brain).
104 2936 Bt.3595 Matrix Gla protein.
103 2907 Bt.62205 Ribosomal protein L6.
103 2907 Bt.13194 Signal sequence receptor, alpha.
102 2879 Bt.7187 Ribosomal protein S7.
100 2823 Bt.107063 Fibrinogen gamma chain.
94 2653 Bt.11679 Ribosomal protein L35.
93 2625 Bt.54195 Serine peptidase inhibitor-like, with Kunitz and WAP domains 1 (eppin).
93 2625 Bt.111410 TIMP metallopeptidase inhibitor 2.
89 2512 Bt.8122 Thymosin beta 4, X-linked.
86 2428 Bt.2878 Ubiquitin B.
83 2343 Bt.53556 Histone H3-like.
81 2286 Bt.8462 Ribosomal protein, large, P0.
81 2286 Bt.36113 Sperm mitochondria-associated cysteine-rich protein.
81 2286 Bt.23917 Fibrinogen beta chain.
80 2258 Bt.47334 Tubulin, beta 2C.
79 2230 Bt.59699 Ataxin 2-like.
72 2032 Bt.41234 Sperm autoantigenic protein 17.
71 2004 Bt.22248 Ribosomal protein L13.
70 1976 Bt.49018 Ribosomal protein L37.
69 1948 Bt.49129 Ribosomal protein L26.
69 1948 Bt.28032 Hepatoma derived growth factor-like 1.
68 1919 Bt.2934 Ribosomal protein S26.
66 1863 Bt.54151 Uncharacterized LOC100847917.
65 1835 Bt.29996 Transcribed locus, strongly similar to NP_035421.2 60S ribosomal protein L7 [Mus musculus].
64 1807 Bt.64532 CDNA clone IMAGE:7944277.
63 1778 Bt.66780 Transcribed locus, strongly similar to XP_001249544.1 PREDICTED: uncharacterized protein LOC781191 [Bos taurus].
61 1722 Bt.8015 Ribosomal protein S24.
61 1722 Bt.54201 Cystatin.
60 1694 Bt.4952 Transcribed locus, strongly similar to NP_001102018.1 60S ribosomal protein L22-like 1 [Rattus norvegicus].
60 1694 Bt.21766 Myeloid leukemia factor 1.
59 1665 Bt.48141 CAMP responsive element modulator.
59 1665 Bt.4286 Ribosomal protein S27a.
58 1637 Bt.95243 Eukaryotic translation elongation factor 1 alpha 1.
58 1637 Bt.43626 Peptidylprolyl isomerase A (cyclophilin A).
57 1609 Bt.13580 Ribosomal protein L7a.
56 1581 Bt.49150 Spermatogenesis associated 4.
56 1581 Bt.4845 Williams Beuren syndrome chromosome region 22.
56 1581 Bt.4618 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed.
55 1553 Bt.22438 RNA binding motif protein 47.
54 1524 Bt.1855 Cystatin C.
53 1496 Bt.63960 Eukaryotic translation elongation factor 1 alpha 1.
53 1496 Bt.53264 Calmodulin 3 (phosphorylase kinase, delta).
53 1496 Bt.5211 Ribosomal protein L21.
53 1496 Bt.51464 Eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein).
53 1496 Bt.49637 Superoxide dismutase 1, soluble.
52 1468 Bt.11318 Ribosomal protein L32.
51 1440 Bt.71409 MHC Class I JSP.1.
51 1440 Bt.3626 Ribosomal protein S11.
50 1411 Bt.50833 CDNA clone IMAGE:8045223.
49 1383 Bt.74593 Transcribed locus, strongly similar to NP_001001593.1 60S ribosomal protein L23a [Danio rerio].
49 1383 Bt.53546 Rhophilin associated tail protein 1.
49 1383 Bt.51304 Germ cell associated 1.
49 1383 Bt.22568 Ribosomal protein L29.
48 1355 Bt.58570 Cystatin 9-like.
48 1355 Bt.54183 Uncharacterized LOC783058.
48 1355 Bt.54135 Chromosome 9 open reading frame, human C6orf225.
48 1355 Bt.50938 DNA-damage inducible 1 homolog 1 (S. cerevisiae).
48 1355 Bt.20141 Hydroxyacylglutathione hydrolase.
48 1355 Bt.13616 BTG family, member 3.
46 1298 Bt.22715 Rhophilin associated tail protein 1-like.
46 1298 Bt.14068 Ribosomal protein S3A.
46 1298 Bt.11675 Ribosomal protein S12.
46 1298 Bt.109450 Ferritin, light polypeptide.
44 1242 Bt.88640 Transition protein 2 (during histone to protamine replacement)-like.
44 1242 Bt.36084 Lactate dehydrogenase C.
44 1242 Bt.2981 Guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1.
44 1242 Bt.106630 RAP1, GTP-GDP dissociation stimulator 1.
43 1214 Bt.3402 Katanin p80 (WD repeat containing) subunit B 1.
43 1214 Bt.28261 Cytochrome c oxidase subunit 6C.
42 1186 Bt.91639 Ribosomal protein L17.
42 1186 Bt.28845 Chaperonin containing TCP1, subunit 3 (gamma).
42 1186 Bt.14418 Cysteine-rich secretory protein 2.
42 1186 Bt.12896 Calmodulin-like.
41 1157 Bt.61128 Ribosomal protein L26.
41 1157 Bt.54137 CDNA clone IMAGE:8068425.
41 1157 Bt.53272 Casein beta.
41 1157 Bt.4732 Aldehyde dehydrogenase 1 family, member A1.
40 1129 Bt.53552 IQ motif containing F1.
40 1129 Bt.52428 Cofilin 1 (non-muscle).
40 1129 Bt.49118 Poly(rC) binding protein 2.
39 1101 Bt.91101 Metallothionein 1E.
39 1101 Bt.58932 Ribosomal protein S13.
39 1101 Bt.54144 CKLF-like MARVEL transmembrane domain containing 2.
39 1101 Bt.49128 Transcribed locus, strongly similar to NP_001016.1 40S ribosomal protein S23 [Homo sapiens].

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Source: NCBI UniGene

EST Sequences

37,258 EST sequences from this library have been submitted to the public sequence database as of 19-Jun-2012.

Source: NCBI GenBank

Click the button to save sequences to a file (FASTA format)

Keywords

  • liver
  • calf
  • female
  • Crossbred X Angus
  • non-normalized

Source: NCBI Clone Registry



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