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An organized view of the transcripome



Library:12777 (dbEST ID)

MARC 7BOV

Library Description

Organism:Bos taurus
Tissue:pooled
Vector:pcDNA3.1
Vector type:plasmid
Cloning site 1:EcoRI
Cloning site 2:NotI
Lab host:DH10B

Library made with RNA pooled from multiple tissues including ovary, hindbrain, uterus, and day-30 whole embryos.

Source: Smith TPL, USDA, ARS, US Meat Animal Research Center

Gene Content Analysis

63,946 ESTs from this library were grouped into 14,637 UniGene entries (putative genes) [UniGene build #101, 19-Jun-2012]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).

ESTs TPM   UniGene Entry
502 7850 Bt.60971 Transcribed locus, strongly similar to XP_001631263.1 predicted protein [Nematostella vectensis].
356 5567 Bt.60969 Transcribed locus, strongly similar to NP_001168806.1 uncharacterized protein LOC100382607 [Zea mays].
347 5426 Bt.100266 Cytochrome c oxidase subunit 1-like.
158 2471 Bt.100267 Transcribed locus, strongly similar to NP_008637.1 cytochrome c oxidase subunit II [Sus scrofa].
125 1955 Bt.7776 Tumor protein, translationally-controlled 1.
115 1798 Bt.7187 Ribosomal protein S7.
110 1720 Bt.14068 Ribosomal protein S3A.
109 1705 Bt.60970 Similar to cytochrome b, partial cds, clone: ORCS10715.
104 1626 Bt.46990 Ribosomal protein L10.
100 1564 Bt.48917 Ribosomal protein L9.
99 1548 Bt.1034 Ribosomal protein S8.
91 1423 Bt.5321 Ferritin, heavy polypeptide 1.
89 1392 Bt.49343 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9).
88 1376 Bt.227 Glutathione S-transferase alpha 3.
88 1376 Bt.101627 Transcribed locus, moderately similar to NP_001006225.1 26S protease regulatory subunit 7 [Gallus gallus].
82 1282 Bt.32650 Alpha-fetoprotein.
81 1267 Bt.49789 Ribosomal protein L10a.
81 1267 Bt.48814 Ribosomal protein S2.
69 1079 Bt.49131 Ribosomal protein L14.
69 1079 Bt.111410 TIMP metallopeptidase inhibitor 2.
67 1048 Bt.23250 Alpha-2-HS-glycoprotein.
63 985 Bt.13580 Ribosomal protein L7a.
58 907 Bt.13839 Hemoglobin, epsilon 1.
57 891 Bt.49711 Ribosomal protein SA.
56 876 Bt.15460 Ribosomal protein S3.
54 844 Bt.109717 Transcribed locus, strongly similar to NP_008412.1 cytochrome c oxidase subunit III [Ovis aries].
53 829 Bt.60972 Transcribed locus, strongly similar to NP_001029277.1 troponin C, slow skeletal and cardiac muscles [Rattus norvegicus].
50 782 Bt.65727 Transcribed locus, strongly similar to NP_035421.2 60S ribosomal protein L7 [Mus musculus].
50 782 Bt.64714 Collagen, type III, alpha 1.
50 782 Bt.59004 Ribosomal protein S5.
50 782 Bt.2878 Ubiquitin B.
49 766 Bt.63960 Eukaryotic translation elongation factor 1 alpha 1.
49 766 Bt.38667 Actin, gamma 1.
48 751 Bt.52428 Cofilin 1 (non-muscle).
48 751 Bt.2981 Guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1.
47 735 Bt.61778 Calmodulin 1 (phosphorylase kinase, delta).
46 719 Bt.64619 GNAS complex locus.
46 719 Bt.42529 Synaptosomal-associated protein, 25kDa.
44 688 Bt.982 Serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1.
44 688 Bt.75045 Thymosin beta 4, X-linked.
44 688 Bt.62205 Ribosomal protein L6.
43 672 Bt.52718 Ribosomal protein S9.
42 657 Bt.95243 Eukaryotic translation elongation factor 1 alpha 1.
42 657 Bt.16991 Eukaryotic translation elongation factor 1 beta 2.
42 657 Bt.106739 Insulin-like growth factor 2 (somatomedin A).
41 641 Bt.62548 Maternally expressed 3 (non-protein coding).
41 641 Bt.49211 Ribosomal protein L13a.
41 641 Bt.49157 Apolipoprotein A-I.
41 641 Bt.23342 Transcribed locus.
40 626 Bt.49052 Ribosomal protein L18a.
40 626 Bt.43626 Peptidylprolyl isomerase A (cyclophilin A).
40 626 Bt.1283 Barrier to autointegration factor 1.
39 610 Bt.59450 Ribosomal protein S16.
39 610 Bt.103127 Transcribed locus, moderately similar to NP_007172.1 cytochrome b [Equus caballus].
38 594 Bt.49064 Orosomucoid 1.
38 594 Bt.34980 Apolipoprotein E.
38 594 Bt.16025 Cytochrome c oxidase subunit IV isoform 1.
36 563 Bt.64610 Selenoprotein P, plasma, 1.
36 563 Bt.53719 Transmembrane BAX inhibitor motif containing 6.
35 547 Bt.48893 Ribosomal protein L4.
34 532 Bt.39668 Eukaryotic translation elongation factor 2.
33 516 Bt.109475 40S ribosomal protein S6-like.
32 500 Bt.1286 Retinoic acid receptor responder (tazarotene induced) 2.
32 500 Bt.11657 Proprotein convertase subtilisin/kexin type 1 inhibitor.
31 485 Bt.65021 Stearoyl-CoA desaturase (delta-9-desaturase).
31 485 Bt.55679 Ribosomal protein L19.
31 485 Bt.49192 Ribosomal protein L15.
31 485 Bt.23178 Decorin.
31 485 Bt.1399 ATPase, H+ transporting, lysosomal 14kDa, V1 subunit F.
30 469 Bt.23418 Fibronectin 1.
29 454 Bt.6494 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11, 17.3kDa.
29 454 Bt.48850 Secreted protein, acidic, cysteine-rich (osteonectin).
29 454 Bt.48137 Heterogeneous nuclear ribonucleoprotein A2/B1.
29 454 Bt.4415 Heat shock 27kDa protein 1.
29 454 Bt.10591 Hemoglobin, alpha 2.
28 438 Bt.53485 Collagen, type I, alpha 2.
28 438 Bt.5336 Transferrin.
28 438 Bt.49566 SH3 domain binding glutamic acid-rich protein like 3.
28 438 Bt.4520 Scavenger receptor class B, member 1.
28 438 Bt.17157 Spectrin repeat containing, nuclear envelope 2.
27 422 Bt.49659 Heat shock 70kDa protein 1A.
27 422 Bt.4797 FK506 binding protein 4, 59kDa.
27 422 Bt.44619 Mediator complex subunit 29.
27 422 Bt.38424 Dystonin.
27 422 Bt.3694 Ornithine decarboxylase antizyme 1.
27 422 Bt.22248 Ribosomal protein L13.
27 422 Bt.16255 Gamma-aminobutyric acid (GABA) B receptor, 1.
27 422 Bt.13949 Glutathione S-transferase pi 1.
26 407 Bt.74200 Regulatory factor X-associated ankyrin-containing protein.
26 407 Bt.64721 Heat shock protein 90kDa alpha (cytosolic), class B member 1.
26 407 Bt.5773 Transcribed locus, strongly similar to XP_001788743.1 PREDICTED: hemoglobin subunit zeta [Bos taurus].
26 407 Bt.5518 Signal recognition particle receptor (docking protein).
26 407 Bt.5318 Retinol binding protein 4, plasma.
26 407 Bt.4287 Guanylate kinase 1.
26 407 Bt.23316 Collagen, type I, alpha 1.
26 407 Bt.1645 Prostaglandin D2 synthase 21kDa (brain).
26 407 Bt.13691 Ubiquitin A-52 residue ribosomal protein fusion product 1.
26 407 Bt.12392 Dynactin 3 (p22).
26 407 Bt.11149 Vimentin.
26 407 Bt.103029 Transcribed locus, strongly similar to NP_001030467.1 NADPH--cytochrome P450 reductase [Bos taurus].

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Source: NCBI UniGene

EST Sequences

79,292 EST sequences from this library have been submitted to the public sequence database as of 19-Jun-2012.

Source: NCBI GenBank

Click the button to save sequences to a file (FASTA format)



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