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An organized view of the transcripome



Library:16702 (dbEST ID)

ID0AEE

Library Description

Organism:Acyrthosiphon pisum
Cultivar:YR2
Developmental stage:L3
Tissue:antennae
Vector:pBS-SKminus
Cloning site 1:EcoRI
Cloning site 2:XhoI
Lab host:XL1-Blue

Sample name: ID0AEE ; Plant growth place: INRA Rennes, UMR BiO3P, 35327, 35653 Le Rheu Cedex France ; Soil conditions: Soil ; Sowing date: 15/04/2004 ; Harvesting date: 15/04/2004 ; Description: Aphids inoculated on one-week old Vicia faba under non-sterile conditions. A. pisum YR2 is holocyclic, i.e. able to change its reproductive mode under short photoperiods (sexual) versus long photoperiods (clonal). experimental condition: long photoperiod (16-hr light/8-hr dark at 18 degc)

Source: D. Tagu, INRA Rennes

Gene Content Analysis

4,262 ESTs from this library were grouped into 1,809 UniGene entries (putative genes) [UniGene build #20, 23-Nov-2010]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).

ESTs TPM   UniGene Entry
101 23698 Aps.11 Similar to putative ribosomal protein S7e.
73 17128 Aps.366 Transcribed locus, weakly similar to XP_001946031.1 PREDICTED: similar to zinc finger, MYM domain containing 1, partial [Acyrthosiphon pisum].
65 15251 Aps.14634 Myosin alkali light chain 1.
54 12670 Aps.22154 MRNA, clone: ACI0AAB2YE07, full-insert cDNA sequence based on ESTs (5'-EST:ACI0AAB2YE07AAM1, 3'-EST ACI0AAB2YE07BBM1).
52 12201 Aps.14681 MRNA, clone: 578K9, full-insert cDNA sequence based on the ESTs (5'-EST:FF315962, 3'-EST:FF316102).
43 10089 Aps.14730 Hypothetical protein LOC100167225.
38 8916 Aps.3220 Transcribed locus.
36 8447 Aps.26343 MRNA, clone: ACI0AAF36YE08, full-insert cDNA sequence based on ESTs (5'-EST:ACI0AAF36YE08AAM1, 3'-EST ACI2AAF6YC09BBM1).
34 7977 Aps.327 Myosin heavy chain 1.
29 6804 Aps.1055 Transcribed locus.
27 6335 Aps.7765 Similar to neurofilament, heavy polypeptide.
27 6335 Aps.7417 Similar to osiris 9.
25 5866 Aps.22145 Hypothetical protein LOC100159024.
23 5397 Aps.26359 Hypothetical protein LOC100168754.
22 5162 Aps.95 MRNA, clone: ACI0AAB2YK18, full-insert cDNA sequence based on ESTs (5'-EST:ACI0AAB2YK18AAM1, 3'-EST ACI0AAB2YK18BBM1).
22 5162 Aps.14736 Transcribed locus, weakly similar to NP_008281.1 ATP synthase F0 subunit 6 [Drosophila melanogaster].
22 5162 Aps.14665 Similar to elongation factor 1-alpha.
21 4927 Aps.6162 Transcribed locus.
19 4458 Aps.26253 Transcribed locus, strongly similar to NP_001155786.1 RR1 cuticle protein 1 [Acyrthosiphon pisum].
18 4223 Aps.14911 ACYPI007928 mRNA, clone: 221O17, complete cds, full-insert cDNA sequence based on the ESTs (5'-EST:EX647451, 3'-EST:EX648316).
18 4223 Aps.14819 Actin.
18 4223 Aps.14690 RR1 cuticle protein 11.
17 3989 Aps.764 Similar to paramyosin, long form.
17 3989 Aps.14756 Similar to cuticular protein.
17 3989 Aps.14686 Similar to Osiris 7 CG1153-PA.
16 3754 Aps.515 MRNA, clone: 154K7, full-insert cDNA sequence based on the ESTs (5'-EST:EX614573, 3'-EST:EX615416).
16 3754 Aps.3221 Myofilin.
16 3754 Aps.22273 ACYPI001305 mRNA, clone: 587O17, complete cds, full-insert cDNA sequence based on the ESTs (5'-EST:FF322163, 3'-EST:FF324114).
16 3754 Aps.22139 Cuticle protein-like.
16 3754 Aps.14719 Cuticular protein 7.
15 3519 Aps.2229 RR1 cuticle protein 7.
15 3519 Aps.1839 Similar to cuticular protein CPG12.
15 3519 Aps.14711 Cuticle protein-like.
14 3285 Aps.22103 RR1 cuticle protein 1.
13 3050 Aps.877 Similar to CG12017 CG12017-PA.
13 3050 Aps.263 Similar to GA14337-PA.
13 3050 Aps.2039 Similar to Cuticular protein 76Bd CG9299-PB.
13 3050 Aps.1802 Cuticular protein analogous to peritrophins 3-C.
13 3050 Aps.14955 Cuticular protein 28.
13 3050 Aps.111 Similar to conserved hypothetical protein.
12 2816 Aps.2639 Similar to CG33978 CG33978-PA.
12 2816 Aps.243 Cuticular protein 16.
12 2816 Aps.112 Similar to putative ADP/ATP translocase.
11 2581 Aps.7819 Transcribed locus.
11 2581 Aps.24717 MRNA, clone: 634A17, full-insert cDNA sequence based on the ESTs (5'-EST:FF322419, 3'-EST:FF323501).
11 2581 Aps.2441 Cuticular protein 47.
11 2581 Aps.128 Similar to tubulin alpha chain.
11 2581 Aps.1194 Similar to innexin.
10 2346 Aps.7320 Transcribed locus, weakly similar to XP_001813413.1 PREDICTED: similar to copia-type polyprotein, putative [Tribolium castaneum].
10 2346 Aps.4124 Similar to AGAP010294-PA.
10 2346 Aps.3346 Similar to EG:133E12.1.
10 2346 Aps.26261 Cuticular protein 37.
10 2346 Aps.2400 Cuticular protein 23.
10 2346 Aps.2319 Similar to AGAP010734-PA.
10 2346 Aps.14966 Cuticular protein 25.
10 2346 Aps.133 Similar to myosin light chain.
9 2112 Aps.297 Similar to muscle LIM protein.
9 2112 Aps.14697 MRNA, clone: 110M17, full-insert cDNA sequence based on the ESTs (5'-EST:EX603278, 3'-EST:EX604538).
8 1877 Aps.851 Hypothetical protein LOC100168549.
8 1877 Aps.8502 Transcribed locus.
8 1877 Aps.3168 Similar to cuticular protein 111, RR-3 family (AGAP006931-PA).
8 1877 Aps.3053 Similar to serine 3-dehydrogenase.
8 1877 Aps.2506 Hypothetical protein LOC100160404.
8 1877 Aps.24740 Hypothetical protein LOC100159472.
7 1642 Aps.5897 Similar to laccase-like multicopper oxidase 1.
7 1642 Aps.473 Cytochrome B5-like protein.
7 1642 Aps.337 Similar to Neural Lazarillo CG33126-PA.
7 1642 Aps.286 MRNA, clone: ACI0AAE7YN15, full-insert cDNA sequence based on ESTs (5'-EST:ACI0AAE7YN15AAM1, 3'-EST ACI2AAE1YI15BBM1).
7 1642 Aps.278 MRNA, clone: ACI0AAD15YN11, full-insert cDNA sequence based on ESTs (5'-EST:ACI0AAD15YN11AAM2, 3'-EST ACI2AAD2YP03BBM1).
7 1642 Aps.2487 Cuticular protein 21.
7 1642 Aps.248 Similar to yellow-e.
7 1642 Aps.24759 Cuticular protein 44.
7 1642 Aps.22586 Transcribed locus.
7 1642 Aps.22187 Cuticular protein 11.
7 1642 Aps.188 Similar to LDLa domain containing chitin binding protein 1 CG8756-PC.
7 1642 Aps.16173 Transcribed locus, strongly similar to NP_001156113.1 hypothetical protein LOC100161459 [Acyrthosiphon pisum].
7 1642 Aps.14735 Actin.
7 1642 Aps.14723 Similar to cuticular protein CPG12.
7 1642 Aps.14651 Similar to putative ribosomal protein S2.
7 1642 Aps.12632 Transcribed locus.
6 1408 Aps.8394 Transcribed locus.
6 1408 Aps.7902 Similar to AGAP003037-PA.
6 1408 Aps.577 Similar to putative ribosomal protein L3.
6 1408 Aps.5315 Transcribed locus.
6 1408 Aps.2445 Cuticular protein 29.
6 1408 Aps.22672 Cuticular protein 22.
6 1408 Aps.206 Rieske iron-sulfur protein.
6 1408 Aps.158 Similar to 60S ribosomal protein L5.
6 1408 Aps.14958 Cuticular protein.
6 1408 Aps.14818 Transcribed locus, weakly similar to XP_855059.1 PREDICTED: similar to AHNAK nucleoprotein isoform 1 [Canis familiaris].
6 1408 Aps.14748 Similar to GA21525-PA.
6 1408 Aps.14710 Cuticular protein.
6 1408 Aps.115 Similar to Ribosomal protein S9 CG3395-PA.
6 1408 Aps.1092 Similar to CG2016 CG2016-PB.
5 1173 Aps.8591 Transcribed locus, weakly similar to XP_001601665.1 PREDICTED: hypothetical protein [Nasonia vitripennis].
5 1173 Aps.849 Similar to ectodermal CG6611-PA.
5 1173 Aps.8444 Transcribed locus.
5 1173 Aps.8024 Similar to chitin deacetylase 5.
5 1173 Aps.7493 Transcribed locus.
5 1173 Aps.67 Similar to AGAP007393-PB.

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Source: NCBI UniGene

EST Sequences

9,133 EST sequences from this library have been submitted to the public sequence database as of 23-Nov-2010.

Source: NCBI GenBank

Click the button to save sequences to a file (FASTA format)

Keywords

  • antenna
  • nymph
  • long photoperiod

Source: NCBI Clone Registry



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