NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
Finding cDNAs

UGID:486627     UniGene Xl.78     Xenopus laevis (African clawed frog)   lig1
Ligase I, DNA, ATP-dependent (lig1)

African clawed frog protein-coding gene lig1. Represented by 11 ESTs from 7 cDNA libraries. Corresponds to reference sequence NM_001088184.1. [UniGene 486627 - Xl.78]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001081653.1 DNA ligase 1 X. laevis 100.0 1069
NP_001119860.1 DNA ligase 1 D. rerio 66.3 1057
NP_000225.1 DNA ligase 1 H. sapiens 62.9 918
NP_034845.2 DNA ligase 1 M. musculus 62.8 920
NP_611843.2 DNA ligase I D. melanogaster 59.1 711
NP_741625.2 Protein LIG-1, isoform a C. elegans 54.1 619
XP_001702891.1 DNA ligase C. reinhardtii 52.4 628
NP_172293.2 DNA ligase 1 A. thaliana 51.5 702
NP_010117.1 DNA ligase (ATP) CDC9 S. cerevisiae 47.8 688
XP_957121.1 DNA ligase (Polydeoxyribonucleotide synthase [ATP]) N. crassa 46.4 870
Other hits (2 of 50) [Show all]SpeciesId(%)Len(aa)
XP_002941929.1 PREDICTED: DNA ligase 1 X. tropicalis 90.0 1039
XP_003643178.1 PREDICTED: DNA ligase 1-like G. gallus 73.8 655

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: whole body; ovary; head; endomesoderm
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (2)

L43496.1 Xenopus laevis ligase I (ligI) mRNA, complete cds PA
NM_001088184.1 Xenopus laevis ligase I, DNA, ATP-dependent (lig1), mRNA PA

EST sequences (11)

BG408562.1 Clone IMAGE:3405508 whole body 5' read
BG162932.1 Clone IMAGE:3579783 head 5' read P
BE680080.1 Clone IMAGE:3743840 whole body 5' read P
AW642659.1 Clone PBX0120B07 whole body 5' read P
BJ041893.1 Clone XL027p11 whole body 5' read
BJ034270.1 Clone XL026p11 whole body 5' read
BI443807.1 Clone IMAGE:5048028 ovary 5' read
BU915183.1 Clone IMAGE:6641835 whole body 5' read P
BX855585.1 Clone IMAGp998E0314226_;_IMAGE:6641835 whole body 5' read P
DY553131.1 Clone IMAGE:8330532 ovary 5' read P
DC050993.1 Clone xlk147k20ex endomesoderm 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help