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UGID:486627     UniGene Xl.78     Xenopus laevis (African clawed frog)   lig1
Ligase I, DNA, ATP-dependent (lig1)

African clawed frog protein-coding gene lig1. Represented by 11 ESTs from 7 cDNA libraries. Corresponds to reference sequence NM_001088184.1. [UniGene 486627 - Xl.78]

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001081653.1 DNA ligase 1 X. laevis 100.0 1069
NP_001119860.1 DNA ligase 1 D. rerio 66.3 1057
NP_000225.1 DNA ligase 1 H. sapiens 62.9 918
NP_034845.2 DNA ligase 1 M. musculus 62.8 920
NP_611843.2 DNA ligase I D. melanogaster 59.1 711
NP_741625.2 Protein LIG-1, isoform a C. elegans 54.1 619
XP_001702891.1 DNA ligase C. reinhardtii 52.4 628
NP_172293.2 DNA ligase 1 A. thaliana 51.5 702
NP_010117.1 DNA ligase (ATP) CDC9 S. cerevisiae 47.8 688
XP_957121.1 DNA ligase (Polydeoxyribonucleotide synthase [ATP]) N. crassa 46.4 870
Other hits (2 of 50) [Show all]SpeciesId(%)Len(aa)
XP_002941929.1 PREDICTED: DNA ligase 1 X. tropicalis 90.0 1039
XP_003643178.1 PREDICTED: DNA ligase 1-like G. gallus 73.8 655

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: whole body; ovary; head; endomesoderm
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (2)

L43496.1 Xenopus laevis ligase I (ligI) mRNA, complete cds PA
NM_001088184.1 Xenopus laevis ligase I, DNA, ATP-dependent (lig1), mRNA PA

EST sequences (11)

BG408562.1 Clone IMAGE:3405508 whole body 5' read
BG162932.1 Clone IMAGE:3579783 head 5' read P
BE680080.1 Clone IMAGE:3743840 whole body 5' read P
AW642659.1 Clone PBX0120B07 whole body 5' read P
BJ041893.1 Clone XL027p11 whole body 5' read
BJ034270.1 Clone XL026p11 whole body 5' read
BI443807.1 Clone IMAGE:5048028 ovary 5' read
BU915183.1 Clone IMAGE:6641835 whole body 5' read P
BX855585.1 Clone IMAGp998E0314226_;_IMAGE:6641835 whole body 5' read P
DY553131.1 Clone IMAGE:8330532 ovary 5' read P
DC050993.1 Clone xlk147k20ex endomesoderm 5' read P

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

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