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UGID:3026783     UniGene Ssa.32859     Salmo salar (Atlantic salmon)   tpx2
Targeting protein for Xklp2 (tpx2)

Atlantic salmon protein-coding gene tpx2. Represented by 34 ESTs from 8 cDNA libraries. Corresponds to reference sequence NM_001140179.1. [UniGene 3026783 - Ssa.32859]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001133651.1 Targeting protein for Xklp2 S. salar 100.0 721
XP_003201259.1 PREDICTED: targeting protein for Xklp2-B-like D. rerio 71.4 713
NP_001086751.1 targeting protein for Xklp2-B X. laevis 54.1 538
NP_001135447.1 Tpx2 gene product M. musculus 50.4 472
NP_036244.2 TPX2 gene product H. sapiens 50.1 740
Other hits (2 of 19) [Show all]SpeciesId(%)Len(aa)
XP_003454322.1 PREDICTED: targeting protein for Xklp2-B-like O. niloticus 66.8 649
XP_004086389.1 PREDICTED: targeting protein for Xklp2-B-like O. latipes 63.7 687

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
cDNA Sources: mixed; thymus; reproductive system
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (3)

BT045380.1 Salmo salar clone ssal-rgf-519-320 Targeting protein for Xklp2 putative mRNA, complete cds PA
NM_001140179.1 Salmo salar Targeting protein for Xklp2 (tpx2), mRNA PA
JT827311.1 TSA: Salmo salar isotig14249.Sasaskin mRNA sequence A

EST sequences (10 of 34) [Show all sequences]

CA051260.1 mixed P
CA051600.1 mixed
CA060215.1 mixed P
CB513358.1 mixed P
CB516802.1 mixed P
CX353680.1 mixed P
DW339222.1 Clone KG4-2153 reproductive system 5' read
DW552813.1 Clone ssal_rgb2_528_143_rev mixed 5' read P
DW552814.1 Clone ssal_rgb2_528_143_fwd mixed 3' read A
DW582783.1 Clone ssal_rgb2_576_096_fwd mixed 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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