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UGID:552133     UniGene Rn.94978     Rattus norvegicus (Norway rat)   Actb
Actin, beta (Actb)

Norway rat protein-coding gene Actb. Represented by 1543 ESTs from 142 cDNA libraries. Corresponds to reference sequence NM_031144.3. [UniGene 552133 - Rn.94978]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_031419.1 Actb gene product M. musculus 100.0 374
NP_112406.1 Actb gene product R. norvegicus 100.0 374
XP_001363482.1 PREDICTED: actin, cytoplasmic 1-like M. domestica 100.0 374
XP_003443175.1 PREDICTED: actin, cytoplasmic 1 O. niloticus 100.0 374
NP_001082422.1 actin, cytoplasmic 1 X. laevis 100.0 374
NP_998884.1 actb gene product X. tropicalis 100.0 374
NP_990849.1 ACTB gene product G. gallus 100.0 374
XP_003210639.1 PREDICTED: actin, cytoplasmic 1 M. gallopavo 100.0 374
XP_003428315.1 PREDICTED: actin, cytoplasmic 1-like isoform 2 O. anatinus 100.0 374
XP_002802769.1 PREDICTED: actin, cytoplasmic 1-like isoform 1 M. mulatta 100.0 374
XP_003895737.1 PREDICTED: actin, cytoplasmic 1-like isoform 1 P. anubis 100.0 374
NP_001009945.1 ACTB gene product P. troglodytes 100.0 374
NP_001092.1 ACTB gene product H. sapiens 100.0 374
NP_001182774.1 actin, cytoplasmic 1 C. lupus familiaris 100.0 374
NP_001075307.1 ACTB gene product E. caballus 100.0 374
XP_003124328.1 PREDICTED: actin, cytoplasmic 1 S. scrofa 100.0 374
NP_776404.2 ACTB gene product B. taurus 100.0 374
NP_001009784.1 ACTB gene product O. aries 100.0 374
NP_001095153.1 ACTB gene product O. cuniculus 100.0 374
XP_003228820.1 PREDICTED: actin, cytoplasmic type 5-like A. carolinensis 100.0 373
XP_002195916.1 PREDICTED: actin, cytoplasmic type 5-like T. guttata 100.0 373
XP_003972351.1 PREDICTED: actin, cytoplasmic 2-like T. rubripes 99.7 374
NP_001172074.1 Arp1 gene product A. mellifera 99.7 374
NP_571106.1 actb1 gene product D. rerio 99.7 374
NP_001117707.1 actin beta O. mykiss 99.7 374
NP_001116997.1 actin, cytoplasmic 1 S. salar 99.7 374
NP_001098278.1 actb gene product O. latipes 99.7 374
XP_003396989.1 PREDICTED: actin-5C-like isoform 1 B. terrestris 99.7 373
NP_505818.1 Protein ACT-2 C. elegans 99.7 373
NP_001119672.1 LOC100145822 gene product A. pisum 99.7 373
NP_001165843.1 actin related protein 1 T. castaneum 99.7 373
NP_001119727.1 actin, cytoplasmic A4 B. mori 99.7 373
XP_001655175.1 actin A. aegypti 99.7 373
XP_001230772.1 AGAP000651-PA A. gambiae 99.7 373
XP_001870756.1 conserved hypothetical protein C. quinquefasciatus 99.7 373
NP_511052.1 actin 5C, isoform B D. melanogaster 99.7 373
XP_002106247.1 GD16764 D. simulans 99.7 373
NP_001157191.1 Arp1 gene product N. vitripennis 99.7 373
XP_002408110.1 actin, putative I. scapularis 99.7 334
NP_187818.1 actin-11 A. thaliana 95.5 375
XP_001699068.1 actin C. reinhardtii 95.2 375
NP_116614.1 actin S. cerevisiae 93.6 374
XP_961133.2 actin N. crassa 92.8 374
Other hits (2 of 35) [Show all]SpeciesId(%)Len(aa)
NP_001158422.1 act1 gene product S. kowalevskii 99.5 373
NP_001142321.1 uncharacterized protein LOC100274491 Z. mays 99.5 373

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: liver; prostate; eye; dorsal root ganglion; spleen; embryonic tissue; lung; pancreas; brain; kidney; placenta; pituitary gland; heart; mixed; colon; thymus; connective tissue; ovary; adrenal gland; small intestine; uncharacterized tissue; penis; artery; vibrissa; pineal gland; adipose tissue; appendix; cervix; inner ear; testis; stomach; oviduct
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 12
Map position: 12p11
UniSTS entry: PMC97568P1
UniSTS entry: PMC207566P4
UniSTS entry: PMC117352P1
UniSTS entry: PMC18465P1
UniSTS entry: PMC350549P3
UniSTS entry: PMC137792P1
UniSTS entry: PMC24644P4
UniSTS entry: PMC151804P4
UniSTS entry: PMC30411P1
UniSTS entry: PMC122924P2
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (29)

NM_031144.3 Rattus norvegicus actin, beta (Actb), mRNA PA
AB028846.1 Rattus norvegicus mRNA for beta-actin FE-3, partial cds, mouse x rat hybridoma FE-3 P
AF122902.1 Rattus norvegicus beta actin mRNA, partial cds P
BC063166.1 Rattus norvegicus actin, beta, mRNA (cDNA clone MGC:72783 IMAGE:6920838), complete cds PA
EF156276.1 Rattus norvegicus beta-actin mRNA, partial cds P
FQ232682.1 Rattus norvegicus TL0AEA64YM19 mRNA sequence PA
FQ229293.1 Rattus norvegicus TL0ADA48YH01 mRNA sequence P
FQ232650.1 Rattus norvegicus TL0AEA64YO15 mRNA sequence PA
FQ222321.1 Rattus norvegicus TL0ADA25YC19 mRNA sequence
FQ232253.1 Rattus norvegicus TL0AEA66YH21 mRNA sequence
FQ228822.1 Rattus norvegicus TL0ADA51YH13 mRNA sequence PA
FQ232063.1 Rattus norvegicus TL0AEA67YC11 mRNA sequence PA
FQ225285.1 Rattus norvegicus TL0AEA54YH20 mRNA sequence P
FQ231691.1 Rattus norvegicus TL0AEA68YI22 mRNA sequence P
FQ231503.1 Rattus norvegicus TL0AEA6YE04 mRNA sequence PA
FQ212279.1 Rattus norvegicus TL0AAA62YD18 mRNA sequence
FQ234964.1 Rattus norvegicus TL0AEA56YP21 mRNA sequence
FQ231277.1 Rattus norvegicus TL0AEA73YA15 mRNA sequence P
FQ228068.1 Rattus norvegicus TL0AEA10YJ24 mRNA sequence P
FQ234257.1 Rattus norvegicus TL0AEA59YJ23 mRNA sequence
FQ227295.1 Rattus norvegicus TL0AEA13YN19 mRNA sequence
FQ227201.1 Rattus norvegicus TL0AEA14YH07 mRNA sequence P
FQ234180.1 Rattus norvegicus TL0AEA59YO06 mRNA sequence
FQ233972.1 Rattus norvegicus TL0AEA5YK16 mRNA sequence
FQ227027.1 Rattus norvegicus TL0AEA15YI18 mRNA sequence PA
FQ226945.1 Rattus norvegicus TL0AEA15YO17 mRNA sequence P
FQ223792.1 Rattus norvegicus TL0ACA86YK18 mRNA sequence
FQ230046.1 Rattus norvegicus TL0ADA45YN05 mRNA sequence
FQ229886.1 Rattus norvegicus TL0ADA46YF16 mRNA sequence

EST sequences (10 of 1543) [Show all sequences]

C06968.1 Clone RBC702 pancreas P
AA859527.1 Clone UI-R-E0-br-b-10-0-UI embryonic tissue 3' read PA
AA859721.1 Clone UI-R-E0-bx-h-08-0-UI embryonic tissue 3' read A
AA859846.1 Clone UI-R-E0-cc-h-07-0-UI embryonic tissue 3' read A
AA874855.1 Clone UI-R-E0-cg-h-10-0-UI embryonic tissue 3' read A
AA875570.1 Clone UI-R-E0-cm-c-02-0-UI embryonic tissue 3' read A
H31602.1 Clone RPCAR93 adrenal gland 5' read P
H35522.1 Clone RPCAY68 adrenal gland
AA684813.1 Clone RPCAK22 adrenal gland 5' read
AA685117.1 Clone RPCAZ13 adrenal gland 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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