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UGID:550116     UniGene Rn.92961     Rattus norvegicus (Norway rat)   Tuba4a
Tubulin, alpha 4A (Tuba4a)

Norway rat protein-coding gene Tuba4a. Represented by 174 ESTs from 62 cDNA libraries. Corresponds to reference sequence NM_001007004.1. [UniGene 550116 - Rn.92961]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_033473.1 tubulin alpha-4A chain M. musculus 100.0 447
NP_001007005.1 Tuba4a gene product R. norvegicus 100.0 447
XP_001362638.1 PREDICTED: tubulin alpha-4A chain-like M. domestica 100.0 447
XP_001101117.1 PREDICTED: tubulin alpha-4A chain isoform 9 M. mulatta 100.0 447
XP_003908033.1 PREDICTED: tubulin alpha-4A chain isoform 1 P. anubis 100.0 447
XP_003309539.1 PREDICTED: tubulin alpha-4A chain isoform 1 P. troglodytes 100.0 447
NP_005991.1 TUBA4A gene product H. sapiens 100.0 447
XP_536077.2 PREDICTED: tubulin alpha-4A chain isoform 1 C. lupus familiaris 100.0 447
XP_001491960.2 PREDICTED: tubulin alpha-4A chain E. caballus 100.0 447
XP_001928370.3 PREDICTED: tubulin alpha-4A chain S. scrofa 100.0 447
NP_001071626.1 TUBA4A gene product B. taurus 100.0 447
NP_001156527.1 TUBA4A gene product O. aries 100.0 447
XP_002712534.1 PREDICTED: tubulin, alpha 4a O. cuniculus 100.0 447
NP_001087937.1 tubulin, alpha 4b X. laevis 99.1 447
NP_919369.2 tuba1b gene product D. rerio 98.2 448
NP_476772.1 alpha-Tubulin at 84B D. melanogaster 96.9 449
NP_497663.1 Protein MEC-12 C. elegans 94.2 449
XP_001691876.1 alpha tubulin 1 C. reinhardtii 86.8 448
NP_171974.1 tubulin alpha-2/alpha-4 chain A. thaliana 86.4 449
XP_963223.1 tubulin alpha-B chain N. crassa 82.2 444
NP_013625.1 Tub1p S. cerevisiae 78.9 446
Other hits (2 of 58) [Show all]SpeciesId(%)Len(aa)
NP_001016694.1 tuba4b gene product X. tropicalis 99.1 448
XP_003207683.1 PREDICTED: tubulin alpha-1B chain-like M. gallopavo 98.7 450

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: liver; heart; thymus; dorsal root ganglion; spleen; brain; embryonic tissue; pituitary gland; adrenal gland; prostate; mixed; testis; small intestine; inner ear; pancreas; lung; cervix; placenta; eye; connective tissue; kidney; uncharacterized tissue
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 9
Map position: 9q33
UniSTS entry: RH78682
UniSTS entry: RH132688
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (35)

BC083726.1 Rattus norvegicus tubulin, alpha 4A, mRNA (cDNA clone MGC:94628 IMAGE:7191229), complete cds PA
NM_001007004.1 Rattus norvegicus tubulin, alpha 4A (Tuba4a), mRNA PA
FQ232854.1 Rattus norvegicus TL0AEA64YD06 mRNA sequence PA
FQ232744.1 Rattus norvegicus TL0AEA64YJ14 mRNA sequence PA
FQ226026.1 Rattus norvegicus TL0AEA3YE17 mRNA sequence PA
FQ225974.1 Rattus norvegicus TL0AEA3YI02 mRNA sequence PA
FQ216508.1 Rattus norvegicus TL0ACA42YH13 mRNA sequence P
FQ213109.1 Rattus norvegicus TL0AAA49YK14 mRNA sequence PA
FQ212965.1 Rattus norvegicus TL0AAA50YH07 mRNA sequence PA
FQ225881.1 Rattus norvegicus TL0AEA3YN12 mRNA sequence PA
FQ225303.1 Rattus norvegicus TL0AEA54YG23 mRNA sequence PA
FQ225180.1 Rattus norvegicus TL0AEA54YN20 mRNA sequence P
FQ225165.1 Rattus norvegicus TL0AEA54YO18 mRNA sequence PA
FQ212913.1 Rattus norvegicus TL0AAA50YL06 mRNA sequence PA
FQ213871.1 Rattus norvegicus TL0AAA45YC07 mRNA sequence PA
FQ231607.1 Rattus norvegicus TL0AEA68YO06 mRNA sequence P
FQ224845.1 Rattus norvegicus TL0ACA52YN22 mRNA sequence P
FQ218669.1 Rattus norvegicus TL0ABA50YH23 mRNA sequence PA
FQ213658.1 Rattus norvegicus TL0AAA46YI09 mRNA sequence PA
FQ235001.1 Rattus norvegicus TL0AEA56YN15 mRNA sequence PA
FQ231447.1 Rattus norvegicus TL0AEA6YH09 mRNA sequence PA
FQ231419.1 Rattus norvegicus TL0AEA6YJ02 mRNA sequence P
FQ227902.1 Rattus norvegicus TL0AEA11YF04 mRNA sequence P
FQ215549.1 Rattus norvegicus TL0ACA47YM18 mRNA sequence PA
FQ215445.1 Rattus norvegicus TL0ACA48YD13 mRNA sequence PA
FQ234507.1 Rattus norvegicus TL0AEA58YL06 mRNA sequence PA
FQ215251.1 Rattus norvegicus TL0ACA48YP08 mRNA sequence PA
FQ215031.1 Rattus norvegicus TL0ACA50YB09 mRNA sequence PA
FQ227345.1 Rattus norvegicus TL0AEA13YL03 mRNA sequence P
FQ214970.1 Rattus norvegicus TL0ACA50YF02 mRNA sequence P
FQ227300.1 Rattus norvegicus TL0AEA13YN13 mRNA sequence P
FQ234185.1 Rattus norvegicus TL0AEA59YN23 mRNA sequence PA
FQ234032.1 Rattus norvegicus TL0AEA5YG21 mRNA sequence P
FQ230321.1 Rattus norvegicus TL0AEA9YI02 mRNA sequence PA
FQ230256.1 Rattus norvegicus TL0AEA9YL20 mRNA sequence PA

EST sequences (10 of 174) [Show all sequences]

H32672.1 Clone RPCCG03 adrenal gland 5' read P
H34265.1 Clone RPNBQ02 adrenal gland 5' read P
H34366.1 Clone RPNBT14 adrenal gland 5' read P
AA800948.1 Clone RLUAN44 lung 3' read PA
AI012203.1 Clone RPLAT92 placenta 3' read P
AI104762.1 Clone RHECI66 heart 3' read PA
AI104948.1 Clone RHECL60 heart 3' read A
AI231473.1 Clone REMDK58 embryonic tissue 3' read P
AI602330.1 Clone UI-R-AA0-wn-d-10-0-UI heart 3' read PA
AI705683.1 Clone UI-R-AD1-zp-f-10-0-UI heart 3' read PA


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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