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UGID:377435     UniGene Rn.974     Rattus norvegicus (Norway rat)   Calr
Calreticulin (Calr)

Norway rat protein-coding gene Calr. Represented by 513 ESTs from 125 cDNA libraries. Corresponds to reference sequence NM_022399.2. [UniGene 377435 - Rn.974]

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_071794.1 Calr gene product R. norvegicus 100.0 415
NP_031617.1 Calr gene product M. musculus 99.5 415
NP_004334.1 CALR gene product H. sapiens 97.8 416
NP_001080096.1 calreticulin precursor X. laevis 87.0 414
NP_956007.1 calrl2 gene product D. rerio 84.1 415
NP_524293.2 calreticulin, isoform A D. melanogaster 79.2 402
NP_504575.1 Protein CRT-1 C. elegans 73.8 393
XP_001689661.1 calreticulin 2, calcium-binding protein C. reinhardtii 63.2 405
NP_172392.1 calreticulin-2 A. thaliana 61.6 423
Other hits (2 of 52) [Show all]SpeciesId(%)Len(aa)
NP_001075704.1 CALR gene product O. cuniculus 98.6 417
XP_867310.2 PREDICTED: calreticulin isoform 4 C. lupus familiaris 98.1 416

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: liver; placenta; connective tissue; mixed; prostate; pancreas; embryonic tissue; adrenal gland; colon; artery; adipose tissue; pineal gland; eye; brain; spleen; dorsal root ganglion; heart; testis; ovary; pituitary gland; kidney; lung; vibrissa; nerve; small intestine; inner ear; thymus; uncharacterized tissue; muscle
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 19
Map position: 19q11
UniSTS entry: Ndufb11
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (9)

X53363.1 Rat mRNA for calreticulin PA
X79327.1 R.norvegicus (Sprague Dawley) calreticulin mRNA P
D78308.1 Rattus norvegicus mRNA for calreticulin, complete cds PA
NM_022399.2 Rattus norvegicus calreticulin (Calr), mRNA PA
X13702.1 Rat mRNA for D-beta-hydroxybutyrate dehydrogenase P
BC062395.1 Rattus norvegicus calreticulin, mRNA (cDNA clone MGC:72450 IMAGE:5623178), complete cds PA
FQ226996.1 Rattus norvegicus TL0AEA15YK22 mRNA sequence PA
FQ220096.1 Rattus norvegicus TL0ADA44YD13 mRNA sequence PA
FQ210587.1 Rattus norvegicus TL0ABA26YA05 mRNA sequence P

EST sequences (10 of 513) [Show all sequences]

C06790.1 Clone RBC461 pancreas
AA819173.1 Clone UI-R-A0-ab-f-10-0-UI mixed 3' read A
AA859488.1 Clone UI-R-E0-bv-f-12-0-UI embryonic tissue 3' read A
AA859713.1 Clone UI-R-E0-bx-g-12-0-UI embryonic tissue 3' read P
AA875558.1 Clone UI-R-E0-cm-b-01-0-UI embryonic tissue 3' read A
H31787.1 Clone RPCAX93 adrenal gland 5' read P
H31966.1 Clone RPCBD85 adrenal gland 5' read P
H33572.1 Clone RPNAU13 adrenal gland 3' read A
H32506.1 adrenal gland 5' read
AA849489.1 Clone RMUAF42 muscle 3' read A

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

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