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UGID:438436     UniGene Rn.88057     Rattus norvegicus (Norway rat)   Apc
Adenomatous polyposis coli (Apc)

Norway rat protein-coding gene Apc. Represented by 54 ESTs from 39 cDNA libraries. Corresponds to reference sequence NM_012499.1. [UniGene 438436 - Rn.88057]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_036631.1 Apc gene product R. norvegicus 100.0 2841
NP_031488.2 Apc gene product M. musculus 94.1 2841
NP_001120982.1 APC gene product H. sapiens 91.5 2842
NP_001084351.1 adenomatous polyposis coli homolog X. laevis 75.5 2828
NP_001137312.1 adenomatous polyposis coli protein D. rerio 69.4 2753
NP_477430.1 adenomatous polyposis coli tumor suppressor homolog 2 D. melanogaster 52.3 407
Other hits (2 of 27) [Show all]SpeciesId(%)Len(aa)
XP_003354289.1 PREDICTED: adenomatous polyposis coli protein-like S. scrofa 92.2 796
XP_001504629.1 PREDICTED: adenomatous polyposis coli protein isoform 1 E. caballus 91.8 2844

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; mixed; dorsal root ganglion; pituitary gland; pineal gland; embryonic tissue; colon; spleen; eye; uncharacterized tissue; liver; placenta; pancreas; connective tissue; prostate; heart; kidney; lung
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 18
Map position: 18p12
UniSTS entry: RH138935
UniSTS entry: PMC122454P1
UniSTS entry: UniSTS:237769
UniSTS entry: Apc
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (2)

D38629.1 Rattus norvegicus mRNA for APC protein, complete cds P
NM_012499.1 Rattus norvegicus adenomatous polyposis coli (Apc), mRNA P

EST sequences (10 of 54) [Show all sequences]

AA955065.1 Clone UI-R-A1-ey-g-09-0-UI mixed 3' read P
AI058280.1 Clone UI-R-C1-kl-a-07-0-UI mixed 3' read P
AW142287.1 Clone RGIAU64 spleen 5' read P
AW522247.1 Clone UI-R-BO0-agy-c-05-0-UI brain 3' read PA
AW524083.1 Clone UI-R-BO0-ahr-c-12-0-UI brain 3' read P
AW532721.1 Clone UI-R-BS0-amq-d-06-0-UI embryonic tissue 3' read PA
AW507229.1 Clone 2ndG11 brain P
BE113838.1 Clone UI-R-CA0-axe-a-04-0-UI mixed 3' read P
BE115675.1 Clone UI-R-BJ1-avy-f-06-0-UI heart 3' read P
BE119388.1 Clone UI-R-CA0-bac-a-03-0-UI mixed 3' read PA


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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