NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
Finding cDNAs

UGID:381096     UniGene Rn.8455     Rattus norvegicus (Norway rat)   Ecsit
ECSIT homolog (Drosophila) (Ecsit)

Norway rat protein-coding gene Ecsit. Represented by 45 ESTs from 38 cDNA libraries. Corresponds to reference sequence NM_001006986.1. [UniGene 381096 - Rn.8455]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001006987.1 Ecsit gene product R. norvegicus 100.0 433
NP_001240826.1 Ecsit gene product M. musculus 93.3 434
NP_057665.2 evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial isoform 1 precursor H. sapiens 80.7 430
NP_001070645.1 evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial precursor D. rerio 63.0 368
NP_001091354.1 evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial precursor X. laevis 60.5 353
Other hits (2 of 22) [Show all]SpeciesId(%)Len(aa)
XP_512396.2 PREDICTED: evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial P. troglodytes 83.6 188
XP_001106441.1 PREDICTED: evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial-like isoform 2 M. mulatta 82.1 429

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: heart; mixed; brain; embryonic tissue; prostate; dorsal root ganglion; lung; ovary; connective tissue; liver; muscle; spleen; testis; eye; uncharacterized tissue; pancreas; kidney
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 8
Map position: 8q13
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (5)

BC083762.1 Rattus norvegicus ECSIT homolog (Drosophila), mRNA (cDNA clone MGC:94704 IMAGE:7193076), complete cds PA
NM_001006986.1 Rattus norvegicus ECSIT homolog (Drosophila) (Ecsit), nuclear gene encoding mitochondrial protein, mRNA PA
FQ212584.1 Rattus norvegicus TL0AAA52YI10 mRNA sequence PA
FQ209658.1 Rattus norvegicus TL0ABA41YD23 mRNA sequence PA
FQ215401.1 Rattus norvegicus TL0ACA48YF23 mRNA sequence PA

EST sequences (10 of 45) [Show all sequences]

AA799702.1 Clone RHEAE23 heart 3' read P
AA926268.1 Clone UI-R-A1-ev-c-01-0-UI mixed 3' read PA
AI175424.1 Clone RMUCN30 muscle 3' read PA
AI175479.1 Clone RMUCN96 muscle 3' read PA
AI228429.1 Clone RBRCU66 brain 3' read PA
AI602951.1 Clone UI-R-AC1-xt-g-08-0-UI embryonic tissue 3' read A
AW918660.1 Clone RGIEW14 mixed 5' read P
BE097218.1 Clone UI-R-BO1-apu-f-10-0-UI brain 3' read PA
BE100406.1 Clone UI-R-BJ1-atv-b-02-0-UI heart 3' read A
BF284773.1 Clone RGIEW14 mixed 3' read PA


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help