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UGID:415212     UniGene Rn.61235     Rattus norvegicus (Norway rat)   Gbf1
Golgi brefeldin A resistant guanine nucleotide exchange factor 1 (Gbf1)

Norway rat protein-coding gene Gbf1. Represented by 164 ESTs from 103 cDNA libraries. Corresponds to reference sequence NM_001191634.1. [UniGene 415212 - Rn.61235]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_219953.5 PREDICTED: golgi-specific brefeldin A-resistance factor 1 R. norvegicus 100.0 1860
NP_849261.2 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 M. musculus 98.4 1860
NP_004184.1 GBF1 gene product H. sapiens 96.8 1858
XP_694714.5 PREDICTED: Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 D. rerio 82.3 1868
NP_725133.1 gartenzwerg, isoform A D. melanogaster 51.3 1655
NP_001255140.1 Protein GBF-1, isoform a C. elegans 45.3 1809
Other hits (2 of 32) [Show all]SpeciesId(%)Len(aa)
XP_003483597.1 PREDICTED: golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 S. scrofa 97.1 1860
XP_002718622.1 PREDICTED: golgi-specific brefeldin A resistant guanine nucleotide exchange factor 1 O. cuniculus 97.1 1859

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; harderian gland; epididymis; heart; bladder; liver; inner ear; salivary gland; small intestine; spleen; lung; sternum; thymus; pancreas; mixed; kidney; uncharacterized tissue; colon; muscle; pineal gland; eye; prostate; connective tissue; artery; vibrissa; dorsal root ganglion; embryonic tissue; testis
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 1
Map position: 1q54
UniSTS entry: AI035702
UniSTS entry: RH128849
UniSTS entry: AW049900
UniSTS entry: BF406297
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (2)

FQ216888.1 Rattus norvegicus TL0ACA3YM08 mRNA sequence PA
NM_001191634.1 Rattus norvegicus golgi brefeldin A resistant guanine nucleotide exchange factor 1 (Gbf1), mRNA P

EST sequences (10 of 164) [Show all sequences]

AA924964.1 Clone UI-R-A1-ef-d-10-0-UI mixed 3' read A
AA924983.1 Clone UI-R-A1-eh-b-05-0-UI mixed 3' read A
AI044908.1 Clone UI-R-C1-kk-e-01-0-UI mixed 3' read PA
AI060138.1 Clone UI-R-C1-ll-d-04-0-UI mixed 3' read A
AI410282.1 Clone RKIEA36 kidney 3' read
AI411883.1 Clone RKIDT37 kidney 3' read A
AW521082.1 Clone UI-R-BO0-agp-a-05-0-UI brain 3' read A
AW534259.1 Clone UI-R-BS0-anu-b-10-0-UI embryonic tissue 3' read A
AW917252.1 Clone RGIEB33 mixed 5' read
BE097285.1 Clone UI-R-BO1-apv-e-08-0-UI brain 3' read PA


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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