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UGID:379349     UniGene Rn.4216     Rattus norvegicus (Norway rat)   Nhp2
NHP2 ribonucleoprotein (Nhp2)

Norway rat protein-coding gene Nhp2. Represented by 46 ESTs from 33 cDNA libraries. Corresponds to reference sequence NM_001105779.1. [UniGene 379349 - Rn.4216]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_003750866.1 PREDICTED: H/ACA ribonucleoprotein complex subunit 2-like R. norvegicus 100.0 152
NP_080907.1 Nhp2 gene product M. musculus 98.0 152
NP_060308.1 NHP2 gene product H. sapiens 95.4 152
NP_001084534.1 H/ACA ribonucleoprotein complex subunit 2-like protein X. laevis 80.4 148
NP_997762.1 nhp2 gene product D. rerio 74.7 149
XP_001699242.1 nucleolar protein, small subunit of H/ACA snoRNPs C. reinhardtii 54.2 153
NP_010073.2 Nhp2p S. cerevisiae 52.5 136
NP_499415.1 Protein Y48A6B.3 C. elegans 51.5 132
NP_651965.1 NHP2, isoform A D. melanogaster 46.9 159
NP_196435.1 H/ACA ribonucleoprotein complex subunit 2-like protein A. thaliana 46.0 137
Other hits (2 of 45) [Show all]SpeciesId(%)Len(aa)
XP_002710481.1 PREDICTED: nucleolar protein family A, member 2 isoform 1 O. cuniculus 96.7 152
XP_001095587.1 PREDICTED: h/ACA ribonucleoprotein complex subunit 2 M. mulatta 95.4 152

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: heart; mixed; embryonic tissue; placenta; ovary; brain; cervix; prostate; eye; connective tissue; adrenal gland; muscle; colon; uncharacterized tissue; liver; spleen
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 10
Map position: 10q22
UniSTS entry: RH141376
UniSTS entry: D11Ertd175e
UniSTS entry: AA851865
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (3)

NM_001105779.1 Rattus norvegicus NHP2 ribonucleoprotein (Nhp2), mRNA P
BC162010.1 Rattus norvegicus nucleolar protein family A, member 2, mRNA (cDNA clone MGC:187877 IMAGE:9091322), complete cds PA
FQ222023.1 Rattus norvegicus TL0ADA29YO22 mRNA sequence PA

EST sequences (10 of 46) [Show all sequences]

H34511.1 adrenal gland 5' read
AA849908.1 Clone RMUAK41 muscle 3' read P
AA851865.1 Clone RSPAN66 spleen 3' read P
AA964304.1 Clone UI-R-C0-gu-b-09-0-UI mixed 3' read PA
AI029657.1 Clone UI-R-C0-jg-d-12-0-UI mixed 3' read PA
AI058894.1 Clone UI-R-C1-ks-a-01-0-UI mixed 3' read P
AI177651.1 Clone RPLCD65 placenta 3' read
AI235148.1 Clone ROVCO11 ovary 3' read P
AI236338.1 Clone ROVDE38 ovary 3' read P
AI598905.1 Clone REMDX40 embryonic tissue 3' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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