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UGID:398428     UniGene Rn.40354     Rattus norvegicus (Norway rat)   Mrpl17
Mitochondrial ribosomal protein L17 (Mrpl17)

Norway rat protein-coding gene Mrpl17. Represented by 70 ESTs from 47 cDNA libraries. Corresponds to reference sequence NM_133539.1. [UniGene 398428 - Rn.40354]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_598223.1 Mrpl17 gene product R. norvegicus 100.0 209
NP_079577.1 39S ribosomal protein L17, mitochondrial precursor M. musculus 98.9 175
NP_071344.1 39S ribosomal protein L17, mitochondrial H. sapiens 92.0 174
NP_001085374.1 mitochondrial ribosomal protein L17 X. laevis 78.6 167
NP_001004683.1 mrpl17 gene product D. rerio 76.9 156
NP_523870.2 mitochondrial ribosomal protein L17, isoform A D. melanogaster 46.5 144
Other hits (2 of 24) [Show all]SpeciesId(%)Len(aa)
NP_001231309.1 MRPL17 gene product S. scrofa 94.7 168
XP_001504652.1 PREDICTED: 39S ribosomal protein L17, mitochondrial-like E. caballus 94.1 170

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: mixed; embryonic tissue; heart; dorsal root ganglion; brain; uncharacterized tissue; muscle; placenta; small intestine; connective tissue; pituitary gland; eye; liver; spleen; inner ear; pancreas; adrenal gland; kidney
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 1
Map position: 1q33
UniSTS entry: RH142245
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (5)

U53512.1 Rattus norvegicus brain Na++/Ca++ exchanger-associated protein mRNA, complete cds PA
NM_133539.1 Rattus norvegicus mitochondrial ribosomal protein L17 (Mrpl17), nuclear gene encoding mitochondrial protein, mRNA PA
BC058447.1 Rattus norvegicus mitochondrial ribosomal protein L17, mRNA (cDNA clone MGC:72706 IMAGE:6919782), complete cds PA
FQ229319.1 Rattus norvegicus TL0ADA48YF10 mRNA sequence PA
FQ212468.1 Rattus norvegicus TL0AAA53YP13 mRNA sequence PA

EST sequences (10 of 70) [Show all sequences]

AA875501.1 Clone UI-R-E0-ct-b-12-0-UI embryonic tissue 3' read A
H34212.1 Clone RPNBO45 adrenal gland 5' read P
AA893259.1 Clone RKIBE19 kidney 3' read A
AA943199.1 Clone RBRAG37 brain 3' read A
AA901235.1 Clone UI-R-A1-dw-e-02-0-UI mixed 3' read A
AI103095.1 Clone REMBX22 embryonic tissue 3' read PA
AI103433.1 Clone REMCB85 embryonic tissue 3' read PA
AI104040.1 Clone RHEBW56 heart 3' read
AI171275.1 Clone RMUBI42 muscle 3' read PA
AI231800.1 Clone RHECO43 heart 3' read PA


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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