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UGID:398339     UniGene Rn.40227     Rattus norvegicus (Norway rat)   Exosc3
Exosome component 3 (Exosc3)

Norway rat protein-coding gene Exosc3. Represented by 5 ESTs from 4 cDNA libraries. Corresponds to reference sequence NM_001107936.1. [UniGene 398339 - Rn.40227]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001101406.1 exosome complex exonuclease RRP40 R. norvegicus 100.0 214
NP_079789.1 Exosc3 gene product M. musculus 95.2 208
NP_057126.2 EXOSC3 gene product H. sapiens 84.7 209
NP_001025132.1 exosc3 gene product D. rerio 70.0 140
NP_001089320.1 exosome component 3 X. laevis 64.0 178
NP_722725.1 Rrp40 D. melanogaster 45.3 161
NP_492751.1 Protein EXOS-3 C. elegans 45.0 111
Other hits (2 of 30) [Show all]SpeciesId(%)Len(aa)
XP_001915160.2 PREDICTED: LOW QUALITY PROTEIN: exosome complex component RRP40-like E. caballus 87.1 209
NP_001030474.1 EXOSC3 gene product B. taurus 87.1 209

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: mixed; brain; heart; pancreas
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 5
Map position: 5q22
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (1)

NM_001107936.1 Rattus norvegicus exosome component 3 (Exosc3), mRNA P

EST sequences (5)

AI007868.1 Clone RBRAX07 brain 3' read PA
BF285589.1 Clone RGIFH62 mixed 3' read PA
BF285590.1 Clone RGIFH62 mixed 5' read P
BF525014.1 Clone UI-R-AB0-vt-b-06-0-UI heart 5' read P
BP497214.1 Clone RI15377 pancreas 3' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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