NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
Finding cDNAs

UGID:378339     UniGene Rn.2850     Rattus norvegicus (Norway rat)   H2afx
H2A histone family, member X (H2afx)

Norway rat protein-coding gene H2afx. Represented by 32 ESTs from 22 cDNA libraries. Corresponds to reference sequence NM_001109291.1. [UniGene 378339 - Rn.2850]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001102761.1 H2afx gene product R. norvegicus 100.0 142
NP_034566.1 H2afx gene product M. musculus 98.6 142
NP_002096.1 H2AFX gene product H. sapiens 98.6 142
NP_957367.1 h2afx gene product D. rerio 93.0 141
NP_724343.1 histone H2A D. melanogaster 90.8 120
NP_505463.1 Protein HIS-35 C. elegans 88.1 126
NP_001086099.1 histone H2A.x X. laevis 87.8 138
XP_959442.1 histone H2A N. crassa 81.8 132
XP_001690809.1 histone H2A C. reinhardtii 79.4 125
NP_175517.1 histone H2A 10 A. thaliana 77.6 125
NP_010511.3 Hta1p S. cerevisiae 77.5 129
Other hits (2 of 64) [Show all]SpeciesId(%)Len(aa)
XP_853256.2 PREDICTED: histone H2A.x-like C. lupus familiaris 99.3 142
XP_003129998.2 PREDICTED: histone H2A.x-like S. scrofa 99.3 142

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: embryonic tissue; uncharacterized tissue; brain; colon; lung; heart; dorsal root ganglion; thymus; kidney; connective tissue; spleen
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 8
Map position: 8q22
UniSTS entry: RH128239
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (2)

NM_001109291.1 Rattus norvegicus H2A histone family, member X (H2afx), mRNA PA
FQ228346.1 Rattus norvegicus TL0ADA9YI15 mRNA sequence

EST sequences (10 of 32) [Show all sequences]

AA875257.1 Clone UI-R-E0-cq-d-12-0-UI embryonic tissue 3' read A
AA800281.1 Clone RHEAN36 heart 3' read A
AI102733.1 Clone REMBR85 embryonic tissue 3' read A
AI103587.1 Clone REMCD79 embryonic tissue 3' read A
AI704842.1 Clone UI-R-AC0-yq-a-06-0-UI embryonic tissue 3' read A
AI711431.1 Clone UI-R-AF0-yb-h-08-0-UI embryonic tissue 3' read A
AW143426.1 Clone RGIBU08 embryonic tissue 5' read
AW253022.1 Clone UI-R-BJ0-aeq-d-12-0-UI heart 3' read A
BF555129.1 Clone UI-R-E0-cq-d-12-0-UI embryonic tissue 5' read
BQ782288.1 Clone UI-R-FF0-cpj-p-17-0-UI connective tissue 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help