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UGID:378339     UniGene Rn.2850     Rattus norvegicus (Norway rat)   H2afx
H2A histone family, member X (H2afx)

Norway rat protein-coding gene H2afx. Represented by 32 ESTs from 22 cDNA libraries. Corresponds to reference sequence NM_001109291.1. [UniGene 378339 - Rn.2850]

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001102761.1 H2afx gene product R. norvegicus 100.0 142
NP_034566.1 H2afx gene product M. musculus 98.6 142
NP_002096.1 H2AFX gene product H. sapiens 98.6 142
NP_957367.1 h2afx gene product D. rerio 93.0 141
NP_724343.1 histone H2A D. melanogaster 90.8 120
NP_505463.1 Protein HIS-35 C. elegans 88.1 126
NP_001086099.1 histone H2A.x X. laevis 87.8 138
XP_959442.1 histone H2A N. crassa 81.8 132
XP_001690809.1 histone H2A C. reinhardtii 79.4 125
NP_175517.1 histone H2A 10 A. thaliana 77.6 125
NP_010511.3 Hta1p S. cerevisiae 77.5 129
Other hits (2 of 64) [Show all]SpeciesId(%)Len(aa)
XP_853256.2 PREDICTED: histone H2A.x-like C. lupus familiaris 99.3 142
XP_003129998.2 PREDICTED: histone H2A.x-like S. scrofa 99.3 142

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: embryonic tissue; uncharacterized tissue; brain; colon; lung; heart; dorsal root ganglion; thymus; kidney; connective tissue; spleen
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 8
Map position: 8q22
UniSTS entry: RH128239
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (2)

NM_001109291.1 Rattus norvegicus H2A histone family, member X (H2afx), mRNA PA
FQ228346.1 Rattus norvegicus TL0ADA9YI15 mRNA sequence

EST sequences (10 of 32) [Show all sequences]

AA875257.1 Clone UI-R-E0-cq-d-12-0-UI embryonic tissue 3' read A
AA800281.1 Clone RHEAN36 heart 3' read A
AI102733.1 Clone REMBR85 embryonic tissue 3' read A
AI103587.1 Clone REMCD79 embryonic tissue 3' read A
AI704842.1 Clone UI-R-AC0-yq-a-06-0-UI embryonic tissue 3' read A
AI711431.1 Clone UI-R-AF0-yb-h-08-0-UI embryonic tissue 3' read A
AW143426.1 Clone RGIBU08 embryonic tissue 5' read
AW253022.1 Clone UI-R-BJ0-aeq-d-12-0-UI heart 3' read A
BF555129.1 Clone UI-R-E0-cq-d-12-0-UI embryonic tissue 5' read
BQ782288.1 Clone UI-R-FF0-cpj-p-17-0-UI connective tissue 3' read A

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

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