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UGID:392759     UniGene Rn.26953     Rattus norvegicus (Norway rat)   Sgpl1
Sphingosine-1-phosphate lyase 1 (Sgpl1)

Norway rat protein-coding gene Sgpl1. Represented by 34 ESTs from 28 cDNA libraries. EST representation biased toward fetus. Corresponds to reference sequence NM_173116.1. [UniGene 392759 - Rn.26953]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_775139.1 Sgpl1 gene product R. norvegicus 100.0 567
NP_033189.2 Sgpl1 gene product M. musculus 95.8 567
NP_003892.2 SGPL1 gene product H. sapiens 88.5 567
NP_001091225.1 sphingosine-1-phosphate lyase 1 X. laevis 74.6 397
NP_001082938.1 sgpl1 gene product D. rerio 68.7 563
NP_652032.1 Sphingosine-1-phosphate lyase, isoform A D. melanogaster 52.6 517
XP_963533.1 sphingosine-1-phosphate lyase N. crassa 49.3 509
NP_499913.1 Protein SPL-1 C. elegans 47.8 542
NP_174119.1 Sphingosine-1-phosphate lyase A. thaliana 45.9 529
NP_010580.1 sphinganine-1-phosphate aldolase DPL1 S. cerevisiae 45.5 523
Other hits (2 of 51) [Show all]SpeciesId(%)Len(aa)
XP_003903866.1 PREDICTED: sphingosine-1-phosphate lyase 1 isoform 1 P. anubis 88.6 567
XP_001106861.2 PREDICTED: sphingosine-1-phosphate lyase 1-like M. mulatta 88.5 558

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Restricted Expression: fetus [show more like this]
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; adipose tissue; mixed; pituitary gland; eye; spleen; colon; uncharacterized tissue; thymus; placenta; prostate; pancreas; liver; connective tissue
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 20
Map position: 20q11
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (2)

AJ512838.1 Rattus norvegicus mRNA for sphingosine-1-phosphate lyase (spl gene) P
NM_173116.1 Rattus norvegicus sphingosine-1-phosphate lyase 1 (Sgpl1), mRNA P

EST sequences (10 of 34) [Show all sequences]

AA851801.1 Clone RSPAJ90 spleen 3' read P
AI113219.1 Clone UI-R-C2p-np-h-12-0-UI mixed 3' read A
BM385738.1 Clone UI-R-CN1-clx-o-06-0-UI mixed 3' read PA
BU758321.1 Clone UI-R-FF0-cov-g-05-0-UI connective tissue 3' read PA
CB546399.1 Clone nrhy4-00148-g8 brain 5' read P
CB696101.1 Clone nrhy6-00021-d3 brain 5' read P
CB739145.1 Clone nrwa3-00055-c1 adipose tissue 5' read P
CB741457.1 Clone cr2-00044-g12 colon 5' read P
CB744102.1 Clone nrwa3-00012-d12 adipose tissue 5' read P
CB746863.1 Clone nrpi4-00009-a6 pituitary gland 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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