NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
Finding cDNAs

UGID:3092083     UniGene Rn.218238     Rattus norvegicus (Norway rat)   Lrrtm2
Leucine rich repeat transmembrane neuronal 2 (Lrrtm2)

Norway rat protein-coding gene Lrrtm2. Represented by 3 ESTs from 3 cDNA libraries. Corresponds to reference sequence NM_001109469.1. [UniGene 3092083 - Rn.218238]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001102939.1 Lrrtm2 gene product R. norvegicus 100.0 514
NP_821072.1 leucine-rich repeat transmembrane neuronal protein 2 precursor M. musculus 99.2 514
NP_056379.1 leucine-rich repeat transmembrane neuronal protein 2 precursor H. sapiens 98.1 515
XP_003201382.1 PREDICTED: leucine-rich repeat transmembrane neuronal protein 2-like D. rerio 65.5 541
Other hits (2 of 19) [Show all]SpeciesId(%)Len(aa)
XP_538650.2 PREDICTED: leucine-rich repeat transmembrane neuronal protein 2 isoform 1 C. lupus familiaris 98.5 515
NP_001092847.1 LRRTM2 gene product B. taurus 98.3 515

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 18
Map position: 18p11
UniSTS entry: AI851755
UniSTS entry: Lrrtm2
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (1)

NM_001109469.1 Rattus norvegicus leucine rich repeat transmembrane neuronal 2 (Lrrtm2), mRNA P

EST sequences (3)

CB556614.1 Clone nrhy5-00134-e2 brain 5' read P
CB788270.1 Clone nrhy1-00001-e7 brain 5' read
CO405071.1 Clone IMAGE:7320048 brain 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help