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UGID:385884     UniGene Rn.16385     Rattus norvegicus (Norway rat)   Ms4a1
Membrane-spanning 4-domains, subfamily A, member 1 (Ms4a1)

Norway rat protein-coding gene Ms4a1. Represented by 85 ESTs from 12 cDNA libraries. Corresponds to reference sequence NM_001107578.1. [UniGene 385884 - Rn.16385]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001101048.1 B-lymphocyte antigen CD20 R. norvegicus 100.0 296
NP_031667.1 Ms4a1 gene product M. musculus 93.5 290
NP_068769.2 MS4A1 gene product H. sapiens 78.8 296
Other hits (2 of 11) [Show all]SpeciesId(%)Len(aa)
XP_002709235.1 PREDICTED: membrane-spanning 4-domains, subfamily A, member 1 O. cuniculus 78.9 297
XP_001086364.1 PREDICTED: b-lymphocyte antigen CD20 isoform 3 M. mulatta 78.5 296

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: mixed; uncharacterized tissue; spleen; thymus; pancreas; dorsal root ganglion; kidney
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 1
Map position: 1q43
UniSTS entry: RH135092
UniSTS entry: M62541
UniSTS entry: Ms4a2
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (6)

BC098745.1 Rattus norvegicus cDNA clone IMAGE:7387276 PA
NM_001107578.1 Rattus norvegicus membrane-spanning 4-domains, subfamily A, member 1 (Ms4a1), mRNA P
FQ232846.1 Rattus norvegicus TL0AEA64YD18 mRNA sequence
FQ225563.1 Rattus norvegicus TL0AEA4YK03 mRNA sequence PA
FQ235337.1 Rattus norvegicus TL0AEA55YJ12 mRNA sequence PA
FQ226425.1 Rattus norvegicus TL0AEA2YD20 mRNA sequence P

EST sequences (10 of 85) [Show all sequences]

AA817742.1 Clone UI-R-A0-aa-h-02-0-UI mixed 3' read A
AA818041.1 Clone UI-R-A0-ai-c-02-0-UI mixed 3' read A
AI410392.1 Clone RKIDL39 kidney 3' read P
AW919987.1 Clone RGIGP35 mixed 5' read P
AW920045.1 Clone RGIGQ09 mixed 5' read
BF288087.1 Clone RGIGP35 mixed 3' read
BF288146.1 Clone RGIGQ09 mixed 3' read
BF548135.1 Clone UI-R-A0-bg-a-05-0-UI mixed 5' read
CB545394.1 Clone cdrg1-00031-d10 dorsal root ganglion 5' read P
CB582709.1 Clone urrg1-00165-g2 uncharacterized tissue 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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