NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy

Query Tips
Build Info
Library Browser
Download UniGene

Related Databases

NIH cDNA Projects
Finding cDNAs

UGID:1968017     UniGene Rn.163453     Rattus norvegicus (Norway rat)   Abcd1
ATP-binding cassette, subfamily D (ALD), member 1 (Abcd1)

Norway rat protein-coding gene Abcd1. Represented by 24 ESTs from 17 cDNA libraries. EST representation biased toward fetus. Corresponds to reference sequence NM_001108821.1. [UniGene 1968017 - Rn.163453]

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001102291.1 ATP-binding cassette sub-family D member 1 R. norvegicus 100.0 736
NP_031461.1 Abcd1 gene product M. musculus 98.6 735
NP_000024.2 ATP-binding cassette sub-family D member 1 H. sapiens 91.9 732
NP_001104656.1 abcd1 gene product D. rerio 72.9 616
NP_503105.1 Peroxisomal Membrane Protein related family member (pmp-4) C. elegans 59.9 653
NP_651906.1 CG2316, isoform A D. melanogaster 56.9 617
XP_957174.1 hypothetical protein NCU01751 N. crassa 47.9 639
Other hits (2 of 41) [Show all]SpeciesId(%)Len(aa)
XP_001491734.1 PREDICTED: ATP-binding cassette sub-family D member 1-like E. caballus 93.9 725
NP_001164833.1 ATP-binding cassette sub-family D member 1 O. cuniculus 93.3 735

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Restricted Expression: fetus [show more like this]
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: placenta; connective tissue; small intestine; colon; lung; heart; uncharacterized tissue; liver; pancreas; mixed; eye; muscle
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: X
Map position: Xq37
UniSTS entry: UniSTS:238038
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (1)

NM_001108821.1 Rattus norvegicus ATP-binding cassette, subfamily D (ALD), member 1 (Abcd1), mRNA P

EST sequences (10 of 24) [Show all sequences]

AI170676.1 Clone RMUAZ79 muscle 3' read
AI177627.1 Clone RPLCD21 placenta 3' read
BF554210.1 Clone UI-R-C0-ho-e-10-0-UI mixed 5' read
BG374951.1 Clone UI-R-CV1-bsw-d-06-0-UI eye 3' read A
BM389221.1 Clone IMAGE:7338412 connective tissue 3' read A
BQ200865.1 Clone UI-R-EB1-clq-m-22-0-UI small intestine 3' read A
BU758554.1 Clone UI-R-FF0-cox-h-18-0-UI connective tissue 3' read A
CB605613.1 Clone cr1-00131-a3 colon 5' read P
CB697740.1 Clone cr1-00103-g11 colon 5' read
CB767662.1 Clone mrpe3-00001-f1 placenta 5' read

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help