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UGID:1620988     UniGene Rn.143966     Rattus norvegicus (Norway rat)   Rbfox3
RNA binding protein, fox-1 homolog (C. elegans) 3 (Rbfox3)

Norway rat protein-coding gene Rbfox3. Represented by 14 ESTs from 12 cDNA libraries. Corresponds to reference sequence NM_001134498.2. [UniGene 1620988 - Rn.143966]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001127970.1 fox-1 homolog C R. norvegicus 100.0 374
NP_001034256.1 Rbfox3 gene product M. musculus 98.9 373
NP_001076044.1 RBFOX3 gene product H. sapiens 91.3 311
XP_002664038.2 PREDICTED: RNA binding protein fox-1 homolog 3-like, partial D. rerio 84.7 313
NP_001106346.1 RNA binding protein, fox-1 homolog 2 X. laevis 54.3 360
NP_497841.1 Protein ASD-1, isoform a C. elegans 48.5 136
Other hits (2 of 26) [Show all]SpeciesId(%)Len(aa)
XP_001371051.1 PREDICTED: RNA binding protein fox-1 homolog 3-like isoform 2 M. domestica 94.9 371
XP_001490683.3 PREDICTED: RNA binding protein fox-1 homolog 3-like isoform 1 E. caballus 91.5 327

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; kidney; embryonic tissue; mixed; eye; pituitary gland; uncharacterized tissue
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 10
Map position: 10q32.3
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (1)

NM_001134498.2 Rattus norvegicus RNA binding protein, fox-1 homolog (C. elegans) 3 (Rbfox3), mRNA P

EST sequences (14)

AA997752.1 Clone UI-R-C0-hy-h-12-0-UI mixed 3' read PA
AI717576.1 Clone UI-R-Y0-acp-h-07-0-UI eye 3' read PA
BF397315.1 Clone UI-R-BS2-bek-h-08-0-UI embryonic tissue 3' read PA
BF561447.1 Clone UI-R-C0-hy-h-12-0-UI mixed 5' read P
BG376463.1 Clone UI-R-CU0-but-g-09-0-UI kidney 3' read PA
BG380409.1 Clone UI-R-CT0-btw-h-07-0-UI brain 3' read PA
CB701324.1 Clone mrmn3-00033-g8 brain 5' read P
CB710527.1 Clone nrhy4-00030-f11 brain 5' read
CB792166.1 Clone nrpi4-00002-g6 pituitary gland 5' read
CR461888.1 Clone LIONp463B09441 uncharacterized tissue 3' read
CO399536.1 Clone IMAGE:7317956 brain 5' read
CO404881.1 Clone IMAGE:7314245 brain 5' read
CO405574.1 Clone IMAGE:7314660 brain 5' read
FQ101642.1 Clone TL0AAA42YK06 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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