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UGID:1434807     UniGene Rn.129558     Rattus norvegicus (Norway rat)   Gapdh
Glyceraldehyde-3-phosphate dehydrogenase (Gapdh)

Norway rat protein-coding gene Gapdh. Represented by 236 ESTs from 65 cDNA libraries. Corresponds to reference sequence NM_017008.4. [UniGene 1434807 - Rn.129558]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001062726.1 PREDICTED: glyceraldehyde-3-phosphate dehydrogenase-like R. norvegicus 100.0 332
XP_001476757.1 PREDICTED: glyceraldehyde-3-phosphate dehydrogenase-like isoform 2 M. musculus 99.1 332
NP_002037.2 GAPDH gene product H. sapiens 95.5 331
NP_001108586.1 gapdh gene product D. rerio 87.7 332
NP_001080567.1 glyceraldehyde-3-phosphate dehydrogenase X. laevis 87.4 332
NP_508535.1 Protein GPD-2 C. elegans 81.8 335
NP_525091.1 glyceraldehyde 3 phosphate dehydrogenase 2, isoform B D. melanogaster 81.3 331
XP_956977.1 glyceraldehyde 3-phosphate dehydrogenase N. crassa 76.4 330
NP_011708.3 glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) TDH3 S. cerevisiae 73.3 330
NP_172801.1 glyceraldehyde 3-phosphate dehydrogenase A. thaliana 72.9 336
XP_001703199.1 glyceraldehyde 3-phosphate dehydrogenase, dominant splicing variant C. reinhardtii 65.9 355
Other hits (2 of 65) [Show all]SpeciesId(%)Len(aa)
NP_001003142.1 GAPDH gene product C. lupus familiaris 96.7 332
XP_001252512.1 PREDICTED: glyceraldehyde-3-phosphate dehydrogenase-like isoform 2 B. taurus 96.4 332

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: heart; embryonic tissue; spleen; muscle; pancreas; connective tissue; brain; colon; prostate; stomach; artery; dorsal root ganglion; appendix; penis; mixed; adipose tissue; eye; small intestine; placenta; kidney; uncharacterized tissue; liver; adrenal gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 16
Map position: 4q42
UniSTS entry: PMC316856P1
UniSTS entry: PMC109593P1
UniSTS entry: G65758
UniSTS entry: Gapd
UniSTS entry: PMC26839P1
UniSTS entry: PMC150799P1
UniSTS entry: GDB:376732
UniSTS entry: PMC327192P1
UniSTS entry: GAPD
UniSTS entry: PMC102181P3
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (66)

M11561.1 Rat 37 kd protein mRNA, partial cds PA
NM_017008.4 Rattus norvegicus glyceraldehyde-3-phosphate dehydrogenase (Gapdh), mRNA PA
BC059110.1 Rattus norvegicus glyceraldehyde-3-phosphate dehydrogenase, mRNA (cDNA clone MGC:72650 IMAGE:6919611), complete cds PA
BC087743.1 Rattus norvegicus glyceraldehyde-3-phosphate dehydrogenase, mRNA (cDNA clone MGC:105280 IMAGE:7321006), complete cds PA
FQ216864.1 Rattus norvegicus TL0ACA40YI03 mRNA sequence P
FQ216837.1 Rattus norvegicus TL0ACA41YA07 mRNA sequence P
FQ219884.1 Rattus norvegicus TL0ADA45YA03 mRNA sequence P
FQ213512.1 Rattus norvegicus TL0AAA47YG19 mRNA sequence P
FQ222854.1 Rattus norvegicus TL0ADA19YC05 mRNA sequence P
FQ222815.1 Rattus norvegicus TL0ADA19YK16 mRNA sequence P
FQ213219.1 Rattus norvegicus TL0AAA49YA23 mRNA sequence P
FQ216693.1 Rattus norvegicus TL0ACA41YJ08 mRNA sequence P
FQ216528.1 Rattus norvegicus TL0ACA42YF18 mRNA sequence P
FQ214159.1 Rattus norvegicus TL0AAA43YI14 mRNA sequence P
FQ213031.1 Rattus norvegicus TL0AAA50YB18 mRNA sequence P
FQ219485.1 Rattus norvegicus TL0ABA44YO23 mRNA sequence P
FQ219335.1 Rattus norvegicus TL0ABA46YA03 mRNA sequence P
FQ216393.1 Rattus norvegicus TL0ACA43YD01 mRNA sequence P
FQ216387.1 Rattus norvegicus TL0ACA43YD13 mRNA sequence P
FQ216300.1 Rattus norvegicus TL0ACA43YJ24 mRNA sequence P
FQ213997.1 Rattus norvegicus TL0AAA44YG07 mRNA sequence P
FQ216149.1 Rattus norvegicus TL0ACA44YG21 mRNA sequence P
FQ216070.1 Rattus norvegicus TL0ACA44YO07 mRNA sequence P
FQ213870.1 Rattus norvegicus TL0AAA45YC08 mRNA sequence P
FQ235218.1 Rattus norvegicus TL0AEA56YA11 mRNA sequence P
FQ224912.1 Rattus norvegicus TL0ACA52YI11 mRNA sequence P
FQ224851.1 Rattus norvegicus TL0ACA52YN04 mRNA sequence P
FQ215993.1 Rattus norvegicus TL0ACA45YG11 mRNA sequence P
FQ215971.1 Rattus norvegicus TL0ACA45YI15 mRNA sequence P
FQ215967.1 Rattus norvegicus TL0ACA45YJ01 mRNA sequence P
FQ215943.1 Rattus norvegicus TL0ACA45YM05 mRNA sequence P
FQ215886.1 Rattus norvegicus TL0ACA46YC21 mRNA sequence P
FQ215849.1 Rattus norvegicus TL0ACA46YF13 mRNA sequence P
FQ213719.1 Rattus norvegicus TL0AAA46YB20 mRNA sequence P
FQ213616.1 Rattus norvegicus TL0AAA46YL20 mRNA sequence P
FQ215791.1 Rattus norvegicus TL0ACA46YK02 mRNA sequence P
FQ215750.1 Rattus norvegicus TL0ACA46YN02 mRNA sequence P
FQ215641.1 Rattus norvegicus TL0ACA47YG02 mRNA sequence P
FQ212224.1 Rattus norvegicus TL0AAA64YO01 mRNA sequence P
FQ224374.1 Rattus norvegicus TL0ACA68YK09 mRNA sequence P
FQ215599.1 Rattus norvegicus TL0ACA47YJ05 mRNA sequence P
FQ215569.1 Rattus norvegicus TL0ACA47YL09 mRNA sequence P
FQ215515.1 Rattus norvegicus TL0ACA47YO18 mRNA sequence P
FQ234586.1 Rattus norvegicus TL0AEA58YG08 mRNA sequence P
FQ215397.1 Rattus norvegicus TL0ACA48YG05 mRNA sequence P
FQ215332.1 Rattus norvegicus TL0ACA48YK04 mRNA sequence P
FQ215271.1 Rattus norvegicus TL0ACA48YN20 mRNA sequence P
FQ215268.1 Rattus norvegicus TL0ACA48YN24 mRNA sequence P
FQ220804.1 Rattus norvegicus TL0ADA41YJ23 mRNA sequence P
FQ215014.1 Rattus norvegicus TL0ACA50YC11 mRNA sequence P
FQ214999.1 Rattus norvegicus TL0ACA50YD12 mRNA sequence P
FQ214977.1 Rattus norvegicus TL0ACA50YE16 mRNA sequence P
FQ214849.1 Rattus norvegicus TL0ACA50YM03 mRNA sequence P
FQ227194.1 Rattus norvegicus TL0AEA14YI04 mRNA sequence P
FQ214792.1 Rattus norvegicus TL0ACA50YP21 mRNA sequence P
FQ214749.1 Rattus norvegicus TL0ACA51YE07 mRNA sequence P
FQ214661.1 Rattus norvegicus TL0ACA51YK21 mRNA sequence P
FQ214654.1 Rattus norvegicus TL0ACA51YL13 mRNA sequence P
FQ223874.1 Rattus norvegicus TL0ACA84YH03 mRNA sequence P
FQ223716.1 Rattus norvegicus TL0ACA89YB21 mRNA sequence P
FQ223704.1 Rattus norvegicus TL0ACA89YJ07 mRNA sequence P
FQ223625.1 Rattus norvegicus TL0ACA91YA05 mRNA sequence P
FQ223508.1 Rattus norvegicus TL0ADA10YH01 mRNA sequence P
FQ220467.1 Rattus norvegicus TL0ADA42YM03 mRNA sequence P
FQ230403.1 Rattus norvegicus TL0AEA9YD15 mRNA sequence P
FQ220275.1 Rattus norvegicus TL0ADA43YI06 mRNA sequence P

EST sequences (10 of 236) [Show all sequences]

H35273.1 Clone RPNCM12 adrenal gland P
AI012270.1 Clone RPLAU78 placenta 3' read A
AI576894.1 Clone UI-R-AB0-vt-e-03-0-UI heart 3' read A
AI577013.1 Clone UI-R-AB0-vv-f-01-0-UI heart 3' read A
AI577164.1 Clone UI-R-AD0-wd-c-08-0-UI heart 3' read PA
AI577218.1 Clone UI-R-AD0-wf-b-08-0-UI heart 3' read A
AI577642.1 Clone UI-R-AB0-vr-e-11-0-UI heart 3' read A
AI577649.1 Clone UI-R-AB0-vr-f-10-0-UI heart 3' read A
AI577763.1 Clone UI-R-AB0-vs-d-04-0-UI heart 3' read A
AI577860.1 Clone UI-R-AB0-vw-d-08-0-UI heart 3' read PA


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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