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UGID:1164920     UniGene Rn.112573     Rattus norvegicus (Norway rat)   H2afz
H2A histone family, member Z (H2afz)

Norway rat protein-coding gene H2afz. Represented by 96 ESTs from 52 cDNA libraries. Corresponds to reference sequence NM_022674.1. [UniGene 1164920 - Rn.112573]

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_058030.1 H2afz gene product M. musculus 100.0 127
NP_073165.1 H2afz gene product R. norvegicus 100.0 127
XP_001364046.1 PREDICTED: histone H2A.Z-like M. domestica 100.0 127
XP_003225775.1 PREDICTED: histone H2A.Z-like isoform 1 A. carolinensis 100.0 127
XP_003966802.1 PREDICTED: histone H2A.Z-like T. rubripes 100.0 127
NP_001232784.1 H2A histone family, member V T. guttata 100.0 127
NP_001036788.1 h2afvb gene product D. rerio 100.0 127
XP_004080121.1 PREDICTED: histone H2A.Z-like O. latipes 100.0 127
XP_003458968.1 PREDICTED: histone H2A.Z-like O. niloticus 100.0 127
NP_001026545.1 H2AFZ gene product G. gallus 100.0 127
XP_003205800.1 PREDICTED: histone H2A.Z-like M. gallopavo 100.0 127
XP_001108128.1 PREDICTED: histone H2A.Z-like isoform 2 M. mulatta 100.0 127
XP_517363.3 PREDICTED: histone H2A.Z-like isoform 2 P. troglodytes 100.0 127
NP_002097.1 H2AFZ gene product H. sapiens 100.0 127
XP_003434076.1 PREDICTED: histone H2A.Z C. lupus familiaris 100.0 127
NP_001116594.1 H2AFZ gene product S. scrofa 100.0 127
NP_777234.1 H2AFZ gene product B. taurus 100.0 127
NP_001009270.1 H2AFZ gene product O. aries 100.0 127
NP_001087351.1 MGC85536 protein X. laevis 99.2 127
NP_524519.1 histone H2A variant, isoform A D. melanogaster 99.2 122
NP_500569.1 Protein HTZ-1 C. elegans 90.8 130
XP_001693700.1 histone H2A variant C. reinhardtii 88.9 126
NP_175683.1 histone H2A protein 9 A. thaliana 86.0 128
NP_014631.1 Htz1p S. cerevisiae 74.4 132
XP_963338.1 hypothetical protein NCU05347 N. crassa 74.3 136
Other hits (2 of 50) [Show all]SpeciesId(%)Len(aa)
XP_003364829.1 PREDICTED: histone H2A.V-like E. caballus 99.3 137
NP_001016178.1 h2afv gene product X. tropicalis 99.2 127

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: embryonic tissue; heart; kidney; adrenal gland; prostate; placenta; testis; inner ear; liver; lung; eye; uncharacterized tissue; pancreas; dorsal root ganglion; mixed; brain; vibrissa; connective tissue; pituitary gland; tooth
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 2
Map position: 2q44
UniSTS entry: GDB:451604
UniSTS entry: MARC_6803-6804:992007476:3
UniSTS entry: ksks443
UniSTS entry: MARC_31601-31602:1045759847:1
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (17)

M37584.1 Rat histone (H2A.Z) mRNA, complete cds PA
NM_022674.1 Rattus norvegicus H2A histone family, member Z (H2afz), mRNA PA
BC060564.1 Rattus norvegicus H2A histone family, member Z, mRNA (cDNA clone MGC:72814 IMAGE:6922321), complete cds PA
BC086348.1 Rattus norvegicus H2A histone family, member Z, mRNA (cDNA clone MGC:105426 IMAGE:7302603), complete cds PA
FQ229641.1 Rattus norvegicus TL0ADA47YD20 mRNA sequence PA
FQ222470.1 Rattus norvegicus TL0ADA23YA11 mRNA sequence PA
FQ232362.1 Rattus norvegicus TL0AEA66YB10 mRNA sequence PA
FQ224994.1 Rattus norvegicus TL0AEA55YH23 mRNA sequence PA
FQ221791.1 Rattus norvegicus TL0ADA31YM20 mRNA sequence PA
FQ218826.1 Rattus norvegicus TL0ABA49YK22 mRNA sequence P
FQ213837.1 Rattus norvegicus TL0AAA45YF14 mRNA sequence PA
FQ234498.1 Rattus norvegicus TL0AEA58YL21 mRNA sequence PA
FQ227672.1 Rattus norvegicus TL0AEA12YG03 mRNA sequence PA
FQ220829.1 Rattus norvegicus TL0ADA41YI18 mRNA sequence PA
FQ233964.1 Rattus norvegicus TL0AEA5YL02 mRNA sequence P
FQ233167.1 Rattus norvegicus TL0AEA62YO22 mRNA sequence PA
FQ229746.1 Rattus norvegicus TL0ADA46YN08 mRNA sequence PA

EST sequences (10 of 96) [Show all sequences]

R47043.1 Clone Y428 tooth 5' read P
AA684804.1 Clone RPCAJ57 adrenal gland 5' read P
AA686976.1 Clone RPNCN03 adrenal gland 5' read P
AA893010.1 Clone RKIBB07 kidney 3' read
AA893030.1 Clone RKIBB29 kidney 3' read
AA900110.1 Clone UI-R-E0-dm-g-08-0-UI embryonic tissue 3' read A
AA900242.1 Clone UI-R-E0-de-e-02-0-UI embryonic tissue 3' read A
AA900674.1 Clone UI-R-E0-di-g-12-0-UI embryonic tissue 3' read A
AA900838.1 Clone UI-R-E0-dk-h-05-0-UI embryonic tissue 3' read A
AA955497.1 Clone UI-R-A1-ex-g-10-0-UI mixed 3' read A

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

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