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UGID:382597     UniGene Rn.10691     Rattus norvegicus (Norway rat)   Nrcam
Neuronal cell adhesion molecule (Nrcam)

Norway rat protein-coding gene Nrcam. Represented by 58 ESTs from 35 cDNA libraries. Corresponds to reference sequence NM_013150.1. [UniGene 382597 - Rn.10691]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_037282.1 Nrcam gene product R. norvegicus 100.0 1298
NP_795904.3 Nrcam gene product M. musculus 97.1 1255
NP_001032209.1 NRCAM gene product H. sapiens 94.5 1303
NP_001085487.1 neuronal cell adhesion molecule precursor X. laevis 76.8 1176
NP_001038270.1 neuronal cell adhesion molecule precursor D. rerio 67.9 1266
Other hits (2 of 19) [Show all]SpeciesId(%)Len(aa)
XP_001491938.3 PREDICTED: neuronal cell adhesion molecule isoform 1 E. caballus 94.2 1210
XP_002803474.1 PREDICTED: neuronal cell adhesion molecule isoform 2 M. mulatta 94.0 1303

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; mixed; eye; uncharacterized tissue; colon; prostate; pituitary gland; dorsal root ganglion; inner ear; pancreas; placenta
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 6
Map position: 6q21
UniSTS entry: RH141931
UniSTS entry: RH94713
UniSTS entry: RH140409
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (10)

U81037.1 Rattus norvegicus ankyrin binding cell adhesion molecule NrCAM (NrCAM) mRNA, alternatively spliced form, partial cds P
AY528244.1 Rattus norvegicus neuronal cell adhesion molecule short isoform (Nrcam) mRNA, complete cds, alternatively spliced P
AY574277.1 Rattus norvegicus neuronal cell adhesion molecule long isoform Nc17 (Nrcam) mRNA, complete cds, alternatively spliced P
AY574276.1 Rattus norvegicus neuronal cell adhesion molecule long isoform Nc7 (Nrcam) mRNA, complete cds, alternatively spliced P
AY574275.1 Rattus norvegicus neuronal cell adhesion molecule long isoform Nc6 (Nrcam) mRNA, complete cds, alternatively spliced P
AY574274.1 Rattus norvegicus neuronal cell adhesion molecule long isoform Nc3 (Nrcam) mRNA, complete cds, alternatively spliced P
AY574273.1 Rattus norvegicus neuronal cell adhesion molecule long isoform Nc14 (Nrcam) mRNA, complete cds, alternatively spliced P
AY574272.1 Rattus norvegicus neuronal cell adhesion molecule long isoform Nc1 (Nrcam) mRNA, complete cds, alternatively spliced P
NM_013150.1 Rattus norvegicus neuronal cell adhesion molecule (Nrcam), mRNA P
FQ213274.1 Rattus norvegicus TL0AAA48YM05 mRNA sequence A

EST sequences (10 of 58) [Show all sequences]

AI070357.1 Clone UI-R-Y0-lv-g-06-0-UI eye 3' read A
AI144588.1 Clone UI-R-BT0-pn-d-05-0-UI mixed 3' read A
AI145667.1 Clone UI-R-BT0-qd-a-06-0-UI mixed 3' read A
AI576662.1 Clone UI-R-Y0-ve-c-07-0-UI eye 3' read PA
AI406747.1 Clone RBRDJ29 brain 3' read
AI407972.1 Clone RPLDJ29 placenta 3' read
BF394614.1 Clone UI-R-CA0-bfx-g-12-0-UI mixed 3' read A
BF398941.1 Clone UI-R-CA1-biz-a-08-0-UI mixed 3' read A
BF412407.1 Clone UI-R-BT1-bna-g-11-0-UI mixed 3' read A
BF521770.1 Clone UI-R-Y0-lv-g-06-0-UI eye 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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