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UGID:895146     UniGene Rn.105357     Rattus norvegicus (Norway rat)  
TL0ABA3YL04 mRNA sequence

Norway rat putative protein-coding gene. Represented by 16 ESTs from 12 cDNA libraries. [UniGene 895146 - Rn.105357]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_002727735.1 PREDICTED: probable phospholipid-transporting ATPase 11C-like R. norvegicus 95.5 894
XP_003484207.1 PREDICTED: probable phospholipid-transporting ATPase 11C, partial S. scrofa 95.4 194
NP_001032952.1 Atp11c gene product M. musculus 94.2 909
NP_775965.2 ATP11C gene product H. sapiens 92.2 907
NP_001080824.1 ATPase, class VI, type 11C X. laevis 72.9 878
XP_691382.3 PREDICTED: probable phospholipid-transporting ATPase IH D. rerio 65.0 910
Other hits (2 of 23) [Show all]SpeciesId(%)Len(aa)
XP_003918410.1 PREDICTED: probable phospholipid-transporting ATPase IG isoform 1 P. anubis 92.6 907
XP_002720569.1 PREDICTED: ATPase, class VI, type 11C isoform 2 O. cuniculus 91.8 907

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; mixed; kidney; pancreas; adipose tissue
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: X
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (1)

FQ209772.1 Rattus norvegicus TL0ABA3YL04 mRNA sequence P

EST sequences (10 of 16) [Show all sequences]

AW532193.1 Clone UI-R-C4-alj-e-01-0-UI mixed 3' read PA
BF564203.1 Clone UI-R-C4-alj-e-01-0-UI mixed 5' read P
CB546425.1 Clone nrhy5-00029-h8 brain 5' read P
CB784191.1 Clone nrhy7-00025-a2 brain 5' read P
CB790657.1 Clone nrhz1-00003-f8 brain 5' read P
CB800187.1 Clone nrwa3-00069-g4 adipose tissue 5' read P
CB808415.1 Clone nrhy4-00020-a10 brain 5' read P
CK480592.1 Clone IMAGE:7107135 kidney 5' read
BP489369.1 Clone RI06593 pancreas 3' read A
BP504047.1 Clone RI06593 pancreas 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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