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UGID:382469     UniGene Rn.10514     Rattus norvegicus (Norway rat)   Aldh1a2
Aldehyde dehydrogenase 1 family, member A2 (Aldh1a2)

Norway rat protein-coding gene Aldh1a2. Represented by 35 ESTs from 24 cDNA libraries. Corresponds to reference sequence NM_053896.2. [UniGene 382469 - Rn.10514]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_033048.2 Aldh1a2 gene product M. musculus 100.0 517
NP_446348.2 Aldh1a2 gene product R. norvegicus 100.0 517
NP_003879.2 ALDH1A2 gene product H. sapiens 98.3 517
NP_001084244.1 aldehyde dehydrogenase 1 family, member A2 X. laevis 92.3 517
NP_571925.1 aldh1a2 gene product D. rerio 81.8 517
NP_609285.1 aldehyde dehydrogenase, isoform A D. melanogaster 68.1 501
NP_498081.2 Protein ALH-1, isoform a C. elegans 67.7 506
NP_190383.1 aldehyde dehydrogenase 2B4 A. thaliana 63.6 484
XP_001690955.1 aldehyde dehydrogenase C. reinhardtii 61.5 468
XP_956862.1 aldehyde dehydrogenase N. crassa 60.4 485
NP_015019.1 aldehyde dehydrogenase (NADP(+)) ALD4 S. cerevisiae 55.0 488
Other hits (2 of 61) [Show all]SpeciesId(%)Len(aa)
XP_001172159.1 PREDICTED: retinal dehydrogenase 2 isoform 8 P. troglodytes 98.7 517
XP_535494.2 PREDICTED: retinal dehydrogenase 2 isoform 1 C. lupus familiaris 98.7 517

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: heart; mixed; brain; small intestine; lung; adipose tissue; testis; embryonic tissue; stomach; eye; ovary; inner ear; kidney; uncharacterized tissue
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 8
Map position: 8q24
UniSTS entry: RH133490
UniSTS entry: Aldh1a2
UniSTS entry: Aldh1a2
UniSTS entry: Aldh1a2
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (3)

U60063.1 Rattus norvegicus aldehyde dehydrogenase mRNA, complete cds PA
NM_053896.2 Rattus norvegicus aldehyde dehydrogenase 1 family, member A2 (Aldh1a2), mRNA PA
BC098910.1 Rattus norvegicus aldehyde dehydrogenase 1 family, member A2, mRNA (cDNA clone MGC:114283 IMAGE:7455646), complete cds PA

EST sequences (10 of 35) [Show all sequences]

AI059743.1 Clone UI-R-C1-lk-g-02-0-UI mixed 3' read A
AI598675.1 Clone REMDT71 embryonic tissue 3' read A
AI763603.1 Clone UI-R-Y0-abf-h-05-0-UI eye 3' read A
AW915043.1 Clone RGIBN79 ovary 5' read
BE098471.1 Clone UI-R-BJ1-atc-d-03-0-UI heart 3' read A
BE111477.1 Clone UI-R-BJ1-avb-c-08-0-UI heart 3' read P
BE117034.1 Clone UI-R-BJ1-awt-a-10-0-UI heart 3' read A
BF387336.1 Clone UI-R-CA1-bbr-c-07-0-UI mixed 3' read P
BF546771.1 Clone UI-R-C1-lk-g-02-0-UI mixed 5' read
BI280069.1 Clone UI-R-DD0-cbc-a-08-0-UI stomach 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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