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UGID:642030     UniGene Os.37337     Oryza sativa (rice)   Os01g0513100
Os01g0513100 (Os01g0513100)

Rice protein-coding gene Os01g0513100. Represented by 36 ESTs from 17 cDNA libraries. Corresponds to reference sequence NM_001049715.1. [UniGene 642030 - Os.37337]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001043180.2 Os01g0513100 O. sativa 100.0 132
NP_177008.1 putative protein phosphatase 2C 15 A. thaliana 78.3 345
Other hits (2 of 9) [Show all]SpeciesId(%)Len(aa)
NP_001151513.1 LOC100285147 Z. mays 92.1 341
XP_003567758.1 PREDICTED: probable protein phosphatase 2C 3-like B. distachyon 91.8 341

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: callus; leaf; whole plant; panicle; unspecified tissue; flower; stem; root; mixed
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 1
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (2)

AK059183.1 Oryza sativa Japonica Group cDNA clone:001-023-G06, full insert sequence P
NM_001049715.1 Oryza sativa Japonica Group Os01g0513100 (Os01g0513100) mRNA, complete cds P

EST sequences (10 of 36) [Show all sequences]

CB635459.1 Clone OSIIEb15O02 leaf 5' read P
CB635460.1 Clone OSIIEb15O02 leaf 3' read P
CR285423.1 Clone p687h05p3 unspecified tissue P
CR290306.1 Clone y844f05p5 unspecified tissue P
CR290368.1 Clone y844f05p3 unspecified tissue PA
CK012750.1 panicle 5' read
CK055606.1 panicle 5' read P
CK059518.1 panicle 5' read
CK072428.1 panicle 5' read
CX118765.1 Clone EI116K06 whole plant 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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