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UGID:372456     UniGene Os.20244     Oryza sativa (rice)   Os01g0192000
Os01g0192000 (Os01g0192000)

Rice protein-coding gene Os01g0192000. Represented by 166 ESTs from 46 cDNA libraries. Corresponds to reference sequence NM_001048811.1. [UniGene 372456 - Os.20244]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001042276.1 Os01g0192000 O. sativa 100.0 385
XP_001695600.1 hypothetical protein CHLREDRAFT_119209 C. reinhardtii 64.5 106
NP_179571.1 zinc finger CCCH domain-containing protein 20 A. thaliana 52.2 358
Other hits (2 of 10) [Show all]SpeciesId(%)Len(aa)
XP_001774473.1 predicted protein P. patens 84.5 128
XP_003564747.1 PREDICTED: zinc finger CCCH domain-containing protein 2-like B. distachyon 81.3 384

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: callus; leaf; mixed; panicle; root; stem; flower; unspecified tissue; whole plant; other; seed
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 1
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (4)

AK100770.1 Oryza sativa Japonica Group cDNA clone:J023119N23, full insert sequence P
AK073660.1 Oryza sativa Japonica Group cDNA clone:J033052J05, full insert sequence P
NM_001048811.1 Oryza sativa Japonica Group Os01g0192000 (Os01g0192000) mRNA, complete cds P
HQ858837.1 Oryza sativa Japonica Group isolate UT1347 C3H transcription factor mRNA, partial cds P

EST sequences (10 of 166) [Show all sequences]

AA752908.1 Clone 97AS0633 other
AU098331.1 Clone E31537 panicle A
BI807575.1 Clone A005G11 leaf A
BM038091.1 Clone U002F08 leaf A
BM038804.1 Clone V010A04 leaf A
BI802173.1 Clone H072G08 seed A
BQ906021.1 Clone L007F12 leaf A
CB622745.1 Clone OSIIEa09O03 leaf 5' read P
CB644063.1 Clone OSJNEb05B17 leaf 3' read
CB648154.1 Clone OSJNEb11G19 leaf 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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