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UGID:372162     UniGene Os.19823     Oryza sativa (rice)   Os01g0883800
Os01g0883800 (Os01g0883800)

Rice protein-coding gene Os01g0883800. Represented by 12 ESTs from 7 cDNA libraries. Corresponds to reference sequence NM_001051549.1. [UniGene 372162 - Os.19823]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001045014.1 Os01g0883800 O. sativa 100.0 388
NP_194272.1 gibberellin 20 oxidase 1 A. thaliana 62.7 343
Other hits (2 of 8) [Show all]SpeciesId(%)Len(aa)
XP_002456751.1 hypothetical protein SORBIDRAFT_03g041900 S. bicolor 84.9 398
XP_003567337.1 PREDICTED: gibberellin 20 oxidase 2-like B. distachyon 77.3 396

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: leaf; stem; unspecified tissue; mixed
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 1
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (4)

AB077025.1 Oryza sativa Japonica Group mRNA for GA C20oxidase2, complete cds P
AY114310.1 Oryza sativa (indica cultivar-group) gibberellin 20-oxidase mRNA, complete cds P
NM_001051549.1 Oryza sativa Japonica Group Os01g0883800 (Os01g0883800) mRNA, complete cds P
CT834906.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA116N24, full insert sequence P

EST sequences (12)

CB633905.1 Clone OSIIEb13B08 leaf 5' read P
CB633906.1 Clone OSIIEb13B08 leaf 3' read
CB649397.1 Clone OSJNEb13E20 leaf 5' read P
CB649398.1 Clone OSJNEb13E20 leaf 3' read P
CB658068.1 Clone OSJNEc13N11 leaf 5' read P
CB658069.1 Clone OSJNEc13N11 leaf 3' read P
CB965543.1 Clone NL23_A02 leaf 3' read
CI260266.1 Clone 045-M070R-A01 mixed 3' read P
CI285773.1 Clone 003-M111F-F07 stem 5' read P
CI002357.1 Clone 003-M111R-F07 stem 3' read
CT854985.1 Clone OSIGCRA116N24 unspecified tissue P
CT856973.1 Clone OSIGCRN108M05 unspecified tissue


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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