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UGID:4259947     UniGene Mmu.17829     Macaca mulatta (rhesus monkey)   SEMA6D
Sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D (SEMA6D)

Rhesus monkey protein-coding gene SEMA6D. Represented by 3 ESTs from 3 cDNA libraries. [UniGene 4259947 - Mmu.17829]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001112236.1 PREDICTED: semaphorin-6D-like isoform 3 M. mulatta 100.0 1072
XP_523068.2 PREDICTED: semaphorin-6D isoform 11 P. troglodytes 99.8 1072
NP_705871.1 semaphorin-6D isoform 4 precursor H. sapiens 99.8 1072
NP_954711.1 semaphorin-6D isoform 4 precursor M. musculus 97.5 1072
NP_001089133.1 sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D precursor X. laevis 85.3 1077
NP_001017682.2 semaphorin-6D precursor D. rerio 80.7 1015
Other hits (2 of 19) [Show all]SpeciesId(%)Len(aa)
XP_001502464.1 PREDICTED: semaphorin-6D isoform 1 E. caballus 99.1 1072
XP_003640098.1 PREDICTED: semaphorin-6D-like isoform 1 C. lupus familiaris 98.8 1072

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: digestive; other
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (47)

JU336474.1 TSA: Macaca mulatta Mamu_508595 mRNA sequence PA
JU322084.1 TSA: Macaca mulatta Mamu_508594 mRNA sequence P
JU321988.1 TSA: Macaca mulatta Mamu_508593 mRNA sequence PA
JU322053.1 TSA: Macaca mulatta Mamu_508596 mRNA sequence PA
JV071959.1 TSA: Macaca mulatta Mamu_432916 mRNA sequence P
JV071957.1 TSA: Macaca mulatta Mamu_447959 mRNA sequence P
JV071955.1 TSA: Macaca mulatta Mamu_432279 mRNA sequence
JV071958.1 TSA: Macaca mulatta Mamu_427078 mRNA sequence PA
JV071956.1 TSA: Macaca mulatta Mamu_439211 mRNA sequence P
JV071954.1 TSA: Macaca mulatta Mamu_425685 mRNA sequence
JU493862.1 TSA: Macaca mulatta Mamu_364834 mRNA sequence P
JU493863.1 TSA: Macaca mulatta Mamu_372286 mRNA sequence P
JU493861.1 TSA: Macaca mulatta Mamu_364835 mRNA sequence P
JV723882.1 TSA: Macaca mulatta Mamu_562412 mRNA sequence PA
JV697026.1 TSA: Macaca mulatta Mamu_353140 mRNA sequence P
JV697024.1 TSA: Macaca mulatta Mamu_323665 mRNA sequence P
JV723883.1 TSA: Macaca mulatta Mamu_547531 mRNA sequence P
JV723881.1 TSA: Macaca mulatta Mamu_547530 mRNA sequence P
JV697025.1 TSA: Macaca mulatta Mamu_335906 mRNA sequence P
JV697023.1 TSA: Macaca mulatta Mamu_300470 mRNA sequence P
JV662000.1 TSA: Macaca mulatta Mamu_484899 mRNA sequence A
JV661998.1 TSA: Macaca mulatta Mamu_473675 mRNA sequence P
JV662001.1 TSA: Macaca mulatta Mamu_476348 mRNA sequence P
JV661999.1 TSA: Macaca mulatta Mamu_458985 mRNA sequence
JV629326.1 TSA: Macaca mulatta Mamu_228012 mRNA sequence P
JV629324.1 TSA: Macaca mulatta Mamu_193179 mRNA sequence P
JV629322.1 TSA: Macaca mulatta Mamu_216447 mRNA sequence
JV629320.1 TSA: Macaca mulatta Mamu_210559 mRNA sequence
JV629318.1 TSA: Macaca mulatta Mamu_230763 mRNA sequence P
JV629325.1 TSA: Macaca mulatta Mamu_206773 mRNA sequence P
JV629323.1 TSA: Macaca mulatta Mamu_218822 mRNA sequence P
JV629321.1 TSA: Macaca mulatta Mamu_214852 mRNA sequence P
JV629319.1 TSA: Macaca mulatta Mamu_199221 mRNA sequence P
JV594331.1 TSA: Macaca mulatta Mamu_241081 mRNA sequence P
JV594332.1 TSA: Macaca mulatta Mamu_247197 mRNA sequence
JV565573.1 TSA: Macaca mulatta Mamu_241080 mRNA sequence P
JV565571.1 TSA: Macaca mulatta Mamu_241078 mRNA sequence P
JV558529.1 TSA: Macaca mulatta Mamu_134348 mRNA sequence P
JV558527.1 TSA: Macaca mulatta Mamu_134347 mRNA sequence P
JV565572.1 TSA: Macaca mulatta Mamu_241079 mRNA sequence P
JV558530.1 TSA: Macaca mulatta Mamu_130329 mRNA sequence P
JV558528.1 TSA: Macaca mulatta Mamu_134349 mRNA sequence P
JV521042.1 TSA: Macaca mulatta Mamu_5177 mRNA sequence P
JV482555.1 TSA: Macaca mulatta Mamu_74561 mRNA sequence P
JV482553.1 TSA: Macaca mulatta Mamu_74563 mRNA sequence P
JV489174.1 TSA: Macaca mulatta Mamu_5176 mRNA sequence P
JV482554.1 TSA: Macaca mulatta Mamu_74562 mRNA sequence P

Model sequences (6)

XM_001112417.2 PREDICTED: Macaca mulatta sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D, transcript variant 6 (SEMA6D), mRNA PA
XM_001112444.2 PREDICTED: Macaca mulatta sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D, transcript variant 7 (SEMA6D), mRNA PA
XM_001112381.2 PREDICTED: Macaca mulatta sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D, transcript variant 5 (SEMA6D), mRNA PA
XM_001112343.2 PREDICTED: Macaca mulatta sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D, transcript variant 4 (SEMA6D), mRNA PA
XM_001112236.2 PREDICTED: Macaca mulatta sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D, transcript variant 3 (SEMA6D), mRNA PA
XM_002804757.1 PREDICTED: Macaca mulatta sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D (SEMA6D), mRNA P

EST sequences (3)

CO580760.1 Clone IBIUW:20540 digestive 5' read P
CB229295.1 Clone IMAGE:6885473 other 5' read
CK230241.1 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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