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UGID:273988     UniGene Mm.66264     Mus musculus (mouse)   Stx6
Syntaxin 6 (Stx6)

Mouse protein-coding gene Stx6. Represented by 334 ESTs from 149 cDNA libraries. Corresponds to reference sequence NM_021433.3. [UniGene 273988 - Mm.66264]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_067408.1 Stx6 gene product M. musculus 100.0 254
NP_113853.1 Stx6 gene product R. norvegicus 99.6 254
NP_005810.1 STX6 gene product H. sapiens 97.7 254
NP_001085148.1 syntaxin 6 X. laevis 86.6 253
NP_001017879.1 syntaxin-6 D. rerio 84.4 255
NP_995814.1 syntaxin 6, isoform D D. melanogaster 57.5 322
Other hits (2 of 33) [Show all]SpeciesId(%)Len(aa)
XP_001488966.2 PREDICTED: syntaxin-6-like E. caballus 98.8 254
NP_001075900.1 STX6 gene product B. taurus 98.4 254

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; embryonic tissue; mammary gland; bone marrow; thymus; eye; lung; mixed; skin; uncharacterized tissue; muscle; tongue; pineal gland; uterus; testis; heart; intestine; bone; epididymis; bladder; vagina; spinal cord; stomach; pancreas; spleen; salivary gland; liver; inner ear; extraembryonic tissue; ovary; kidney; nasopharynx
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 1
Map position: 1 G3|1
UniSTS entry: Chr 1 AI415714
UniSTS entry: Chr 9 D5Mit392.1 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (25)

AK049124.1 Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:C330004N07 product:syntaxin 6, full insert sequence P
AK044905.1 Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length enriched library, clone:B130011D03 product:syntaxin 6, full insert sequence P
AK031673.1 Mus musculus 13 days embryo male testis cDNA, RIKEN full-length enriched library, clone:6030481G04 product:syntaxin 6, full insert sequence P
AK020416.1 Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430014J10 product:syntaxin 6, full insert sequence
AK213519.1 Mus musculus cDNA, clone:Y2G0128J07, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027743, based on BLAT search
AK205833.1 Mus musculus cDNA, clone:Y2G0102O19, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027743, based on BLAT search
AK201901.1 Mus musculus cDNA, clone:Y1G0139L18, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027743, based on BLAT search
AK198164.1 Mus musculus cDNA, clone:Y1G0127E23, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027743, based on BLAT search
AK194437.1 Mus musculus cDNA, clone:Y1G0115F09, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027743, based on BLAT search P
AK191002.1 Mus musculus cDNA, clone:Y1G0104H24, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027743, based on BLAT search
AK187876.1 Mus musculus cDNA, clone:Y0G0143F13, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027743, based on BLAT search
AK187319.1 Mus musculus cDNA, clone:Y0G0141D21, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027743, based on BLAT search P
AK184647.1 Mus musculus cDNA, clone:Y0G0131A03, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027743, based on BLAT search
AK183313.1 Mus musculus cDNA, clone:Y0G0125H06, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027743, based on BLAT search
AK182406.1 Mus musculus cDNA, clone:Y0G0121N13, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027743, based on BLAT search
AK179436.1 Mus musculus cDNA, clone:Y0G0110G12, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027743, based on BLAT search P
AK164601.1 Mus musculus 13 days embryo lung cDNA, RIKEN full-length enriched library, clone:D430028K04 product:hypothetical protein, full insert sequence
AK159392.1 Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420019D23 product:syntaxin 6, full insert sequence P
AK151549.1 Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830031J23 product:syntaxin 6, full insert sequence P
AK163167.1 Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730061B12 product:syntaxin 6, full insert sequence P
AF237814.1 Mus musculus syntaxin 6 mRNA, complete cds P
NM_021433.3 Mus musculus syntaxin 6 (Stx6), mRNA P
AK019106.1 Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:2410005I16 product:syntaxin 6, full insert sequence P
AK018167.1 Mus musculus adult male medulla oblongata cDNA, RIKEN full-length enriched library, clone:6330412L13 product:syntaxin 6, full insert sequence P
BC029205.1 Mus musculus syntaxin 6, mRNA (cDNA clone MGC:36281 IMAGE:4039560), complete cds PA

EST sequences (10 of 334) [Show all sequences]

CA751784.1 Clone IMAGE:6829931 brain 5' read P
BY014689.1 Clone G730047I22 lung 5' read
BY030071.1 Clone I0C0006B10 embryonic tissue 5' read
BY046749.1 Clone I730043G10 thymus 5' read
BY057131.1 Clone I730091F11 thymus 5' read
BY074800.1 Clone I920098F13 extraembryonic tissue 5' read
BY073479.1 Clone I920089H14 mixed 5' read P
BY096829.1 Clone K630113K15 thymus 5' read P
BY099447.1 Clone K630127K16 mixed 5' read P
BY152808.1 Clone G370034J15 skin 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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