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UGID:665624     UniGene Mm.272361     Mus musculus (mouse)   Psmc5
Protease (prosome, macropain) 26S subunit, ATPase 5 (Psmc5)

Mouse protein-coding gene Psmc5. Represented by 602 ESTs from 215 cDNA libraries. Corresponds to reference sequence NM_008950.1. [UniGene 665624 - Mm.272361]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_003222519.1 PREDICTED: 26S protease regulatory subunit 8-like A. carolinensis 100.0 412
NP_001232710.1 putative proteasome 26S subunit ATPase 5 variant 1 T. guttata 100.0 410
XP_001376943.2 PREDICTED: 26S protease regulatory subunit 8-like M. domestica 100.0 406
NP_032976.1 Psmc5 gene product M. musculus 100.0 405
NP_112411.1 Psmc5 gene product R. norvegicus 100.0 405
XP_001108909.2 PREDICTED: 26S protease regulatory subunit 8-like isoform 1 M. mulatta 100.0 405
NP_002796.4 PSMC5 gene product H. sapiens 100.0 405
XP_537597.2 PREDICTED: 26S protease regulatory subunit 8 isoform 1 C. lupus familiaris 100.0 405
XP_001500958.1 PREDICTED: 26S protease regulatory subunit 8 E. caballus 100.0 405
NP_999148.1 TBP10 gene product S. scrofa 100.0 405
NP_776866.1 PSMC5 gene product B. taurus 100.0 405
XP_004013072.1 PREDICTED: 26S protease regulatory subunit 8 O. aries 100.0 405
XP_002719523.1 PREDICTED: protease (prosome, macropain) 26S subunit, ATPase 5-like O. cuniculus 100.0 405
NP_001233453.1 PSMC5 gene product P. troglodytes 100.0 397
NP_001085482.1 proteasome (prosome, macropain) 26S subunit, ATPase, 5 X. laevis 99.8 413
NP_989358.1 psmc5 gene product X. tropicalis 99.8 411
XP_425834.3 PREDICTED: 26S protease regulatory subunit 8 G. gallus 99.8 410
XP_003213063.1 PREDICTED: 26S protease regulatory subunit 8-like M. gallopavo 99.8 410
XP_003441913.1 PREDICTED: 26S protease regulatory subunit 8-like O. niloticus 99.8 406
XP_003961613.1 PREDICTED: 26S protease regulatory subunit 8-like T. rubripes 99.8 405
NP_001003740.1 psmc5 gene product D. rerio 99.8 405
XP_004080302.1 PREDICTED: 26S protease regulatory subunit 8-like O. latipes 99.8 405
NP_608447.1 Pros45 D. melanogaster 97.5 402
NP_499609.1 Protein RPT-6 C. elegans 93.0 413
XP_963354.1 26S protease regulatory subunit 8 N. crassa 90.4 386
NP_568389.1 regulatory particle triple-A ATPase 6A A. thaliana 89.7 417
NP_011467.1 proteasome regulatory particle base subunit RPT6 S. cerevisiae 87.1 393
XP_001703109.1 26S proteasome regulatory subunit C. reinhardtii 86.3 292
Other hits (2 of 50) [Show all]SpeciesId(%)Len(aa)
XP_003913339.1 PREDICTED: 26S protease regulatory subunit 8 P. anubis 99.0 422
XP_002588921.1 hypothetical protein BRAFLDRAFT_125428 B. floridae 98.5 400

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: embryonic tissue; brain; mammary gland; pancreas; eye; mixed; thymus; testis; intestine; prostate; heart; blood; liver; pituitary gland; bone marrow; inner ear; skin; stomach; lung; kidney; spleen; ovary; molar; tongue; extraembryonic tissue; uncharacterized tissue; joint; lymph node; fertilized ovum; spinal cord; connective tissue; sympathetic ganglion; thyroid; bladder; bone
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 11
Map position: 11 E1|11
UniSTS entry: Chr 11 AW322457
UniSTS entry: RH136975
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (9)

AK216130.1 Mus musculus cDNA, clone:Y2G0137E24, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000021049, based on BLAT search
AK189340.1 Mus musculus cDNA, clone:Y0G0148M07, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000021049, based on BLAT search
AK145703.1 Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched library, clone:I1C0031K24 product:protease (prosome, macropain) 26S subunit, ATPase 5, full insert sequence P
AK135451.1 Mus musculus 12 days embryo female mullerian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6820422J17 product:protease (prosome, macropain) 26S subunit, ATPase 5, full insert sequence P
Z54219.1 M.musculus mRNA for mSUG1 P
NM_008950.1 Mus musculus protease (prosome, macropain) 26S subunit, ATPase 5 (Psmc5), mRNA P
AK010505.1 Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:2410015M02 product:protease (prosome, macropain) 26S subunit, ATPase 5, full insert sequence P
BC004052.1 Mus musculus protease (prosome, macropain) 26S subunit, ATPase 5, mRNA (cDNA clone IMAGE:3497597), partial cds PA
BC030840.1 Mus musculus protease (prosome, macropain) 26S subunit, ATPase 5, mRNA (cDNA clone MGC:31044 IMAGE:3994523), complete cds PA

EST sequences (10 of 602) [Show all sequences]

BY002610.1 Clone 6620410L05 ovary 5' read P
BY006104.1 Clone F520003N02 kidney 5' read P
BY016392.1 Clone G830016O05 mammary gland 5' read P
BY030318.1 Clone I0C0008O17 fertilized ovum 5' read P
BY031622.1 Clone I1C0007B09 embryonic tissue 5' read P
BY032737.1 Clone I1C0015E19 embryonic tissue 5' read P
BY034621.1 Clone I530013G04 mixed 5' read P
BY037256.1 Clone I530030I09 mixed 5' read P
BY037827.1 Clone I730002O12 thymus 5' read
BY045170.1 Clone I730035K18 thymus 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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