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UGID:314832     UniGene Mm.220329     Mus musculus (mouse)   Scn2a1
Sodium channel, voltage-gated, type II, alpha 1 (Scn2a1)

Mouse protein-coding gene Scn2a1. Represented by 51 ESTs from 33 cDNA libraries. Corresponds to reference sequence NM_001099298.2. [UniGene 314832 - Mm.220329]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001092768.1 sodium channel, voltage-gated, type II, alpha 1 M. musculus 100.0 2005
NP_036779.1 Scn2a1 gene product R. norvegicus 99.7 2004
NP_001035233.1 SCN2A gene product H. sapiens 98.4 2004
NP_001038360.1 scn1lab gene product D. rerio 83.2 1995
NP_001188603.1 paralytic, isoform H D. melanogaster 50.2 2007
Other hits (2 of 34) [Show all]SpeciesId(%)Len(aa)
XP_004004691.1 PREDICTED: sodium channel protein type 2 subunit alpha isoform 3 O. aries 98.8 2005
XP_002712288.1 PREDICTED: sodium channel, voltage-gated, type II, alpha subunit-like isoform 2 O. cuniculus 98.8 2005

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; mixed; eye; oviduct; embryonic tissue; pituitary gland; spinal cord
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 2
Map position: 2 C1.3|2 38.61 cM
UniSTS entry: Scn1a
UniSTS entry: Scn1a
UniSTS entry: Scn2a1
UniSTS entry: Scn3a
UniSTS entry: Scn1a
UniSTS entry: Scn1a
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (12)

AK089150.1 Mus musculus 10 days neonate olfactory brain cDNA, RIKEN full-length enriched library, clone:E530016P20 product:SODIUM CHANNEL PROTEIN, BRAIN II ALPHA SUBUNIT homolog [Rattus norvegicus], full insert sequence P
AK038645.1 Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230052E19 product:sodium channel protein II homolog [Rattus norvegicus], full insert sequence P
AK032187.1 Mus musculus adult male olfactory brain cDNA, RIKEN full-length enriched library, clone:6430408L10 product:sodium channel protein II (fragment) homolog [Homo sapiens], full insert sequence P
AK082598.1 Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length enriched library, clone:C230067N10 product:unclassifiable, full insert sequence
L42341.1 Mus musculus (clone 39) sodium channel mRNA, 5' end of cds P
AJ810516.1 Mus musculus partial mRNA for voltage-gated sodium channel alpha subunit Nav1.2 (Scn2a gene) P
AK143234.1 Mus musculus 2 days pregnant adult female oviduct cDNA, RIKEN full-length enriched library, clone:E230003B04 product:Sodium channel alpha subunit (Fragment) homolog [Cricetulus longicaudatus], full insert sequence PA
AK140186.1 Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230331O07 product:Warning: possibly chimeric clone, full insert sequence
DQ993535.1 Mus musculus clone m2c voltage-gated sodium channel type II (Scn2a) mRNA, 5' UTR, alternatively spliced
NM_001099298.2 Mus musculus sodium channel, voltage-gated, type II, alpha 1 (Scn2a1), mRNA PA
AM905319.1 Mus musculus partial mRNA for sodium channel Nav1.2 (Scn2a gene), strain C57BL/6, variant 1 (exon 17A) P
L42336.1 Mus musculus sodium channel 207 mRNA, 3' end P

EST sequences (10 of 51) [Show all sequences]

BY302062.1 Clone K820002J04 embryonic tissue 5' read
BY129709.1 Clone L630082G05 brain 5' read P
BY129729.1 Clone L630082I05 brain 5' read P
CB234777.1 Clone IMAGE:30245875 pituitary gland 5' read P
CD804345.1 Clone IMAGE:30545226 brain 5' read
CD804408.1 Clone IMAGE:30545562 brain 5' read
CF723518.1 Clone IMAGE:30546101 brain 5' read P
CF745875.1 Clone IMAGE:30618878 brain 5' read
BP426274.1 Clone FD0019 brain P
CX238600.1 brain 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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