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UGID:3355731     UniGene Mm.474432     Mus musculus (mouse)   Fdft1
Farnesyl diphosphate farnesyl transferase 1 (Fdft1)

Mouse protein-coding gene Fdft1. Represented by 561 ESTs from 189 cDNA libraries. Corresponds to reference sequence NM_010191.2. [UniGene 3355731 - Mm.474432]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_034321.2 Fdft1 gene product M. musculus 100.0 415
NP_004453.3 squalene synthase H. sapiens 91.5 413
NP_001189454.1 squalene synthase D. rerio 76.8 406
XP_001703447.1 farnesyl-diphosphate farnesyltransferase C. reinhardtii 56.0 359
NP_195191.2 squalene synthase 2 A. thaliana 51.1 401
NP_012060.1 bifunctional farnesyl-diphosphate farnesyltransferase/squalene synthase S. cerevisiae 50.3 364
XP_959817.1 squalene synthetase N. crassa 46.0 354
Other hits (2 of 45) [Show all]SpeciesId(%)Len(aa)
NP_062111.1 Fdft1 gene product R. norvegicus 95.2 415
XP_002709483.1 PREDICTED: squalene synthase O. cuniculus 92.0 413

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; embryonic tissue; testis; mixed; extraembryonic tissue; mammary gland; liver; joint; thyroid; connective tissue; tongue; heart; eye; pancreas; thymus; bone marrow; uncharacterized tissue; ovary; spinal cord; dorsal root ganglion; bone; vagina; kidney; intestine; bladder; sympathetic ganglion; lung; skin; spleen; fertilized ovum; pituitary gland; stomach; inner ear; salivary gland; molar; epididymis
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 14
Map position: 14 D1|14 33.24 cM
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (16)

AK076062.1 Mus musculus 11 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2700060E05 product:farnesyl diphosphate farnesyl transferase 1, full insert sequence P
BC054722.1 Mus musculus farnesyl diphosphate farnesyl transferase 1, mRNA (cDNA clone MGC:64758 IMAGE:5694816), complete cds PA
AK217297.1 Mus musculus cDNA, clone:Y2G0141F06, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000054963, based on BLAT search P
AK215831.1 Mus musculus cDNA, clone:Y2G0136F01, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000054963, based on BLAT search
AK183967.1 Mus musculus cDNA, clone:Y0G0128B15, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000054963, based on BLAT search P
AK183605.1 Mus musculus cDNA, clone:Y0G0126I03, strand:unspecified
AK168629.1 Mus musculus 17 days pregnant adult female amnion cDNA, RIKEN full-length enriched library, clone:I920039L09 product:farnesyl diphosphate farnesyl transferase 1, full insert sequence P
AK136159.1 Mus musculus in vitro fertilized eggs cDNA, RIKEN full-length enriched library, clone:7420466C18 product:farnesyl diphosphate farnesyl transferase 1, full insert sequence P
AK162294.1 Mus musculus adult male colon cDNA, RIKEN full-length enriched library, clone:9030012J22 product:farnesyl diphosphate farnesyl transferase 1, full insert sequence P
AK158633.1 Mus musculus visual cortex cDNA, RIKEN full-length enriched library, clone:K230034H05 product:farnesyl diphosphate farnesyl transferase 1, full insert sequence P
AK146766.1 Mus musculus 17 days embryo kidney cDNA, RIKEN full-length enriched library, clone:I920051L14 product:farnesyl diphosphate farnesyl transferase 1, full insert sequence P
AK169317.1 Mus musculus 17 days embryo heart cDNA, RIKEN full-length enriched library, clone:I920183G05 product:farnesyl diphosphate farnesyl transferase 1, full insert sequence P
BC138302.1 Mus musculus farnesyl diphosphate farnesyl transferase 1, mRNA (cDNA clone MGC:169926 IMAGE:8861321), complete cds P
BC138301.1 Mus musculus farnesyl diphosphate farnesyl transferase 1, mRNA (cDNA clone MGC:169925 IMAGE:8861320), complete cds P
D29016.1 Mus musculus mRNA for squalene synthase PA
NM_010191.2 Mus musculus farnesyl diphosphate farnesyl transferase 1 (Fdft1), mRNA PA

EST sequences (10 of 561) [Show all sequences]

CA566676.1 Clone NIA:K0404C07_IMAGE:30059454 bone marrow 5' read
BY000717.1 Clone 1020013E13 heart 5' read
BY036316.1 Clone I530023M23 extraembryonic tissue 5' read P
BY038301.1 Clone I730004K19 spleen 5' read P
BY038458.1 Clone I730005D22 thymus 5' read
BY045294.1 Clone I730037C15 spleen 5' read P
BY047620.1 Clone I730047A07 thymus 5' read P
BY049378.1 Clone I730055K22 thymus 5' read P
BY054494.1 Clone I730078G16 thymus 5' read P
BY054994.1 Clone I730080J10 thymus 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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