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UGID:2828389     UniGene Mm.439744     Mus musculus (mouse)   Rara
Retinoic acid receptor, alpha (Rara)

Mouse protein-coding gene Rara. Represented by 133 ESTs from 65 cDNA libraries. Corresponds to 4 reference sequences (different isoforms). [UniGene 2828389 - Mm.439744]

SELECTED PROTEIN SIMILARITIES
GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: embryonic tissue; uncharacterized tissue; thymus; skin; inner ear; spleen; eye; pineal gland; stomach; mammary gland; mixed; extraembryonic tissue; pancreas; kidney; bladder; intestine; liver; lymph node; blood; brain
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 11
Map position: 11 D-E1|11 62.76 cM
UniSTS entry: Rara
UniSTS entry: Chr 11 Rara
UniSTS entry: Rara
UniSTS entry: Chr 11 PMC316377P9
UniSTS entry: Rara
UniSTS entry: Chr 11 Rara
UniSTS entry: Rara
UniSTS entry: Rara
UniSTS entry: Rara
UniSTS entry: Rara
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (20)

X56567.1 Mouse mRNA for retinoic acid receptor alpha (RAR-alpha 6 isoform)
X56568.1 Mouse mRNA for retinoic acid receptor alpha (RAR-alpha 5 isoform)
X56570.1 Mouse mRNA for retinoic acid receptor alpha (RAR-alpha 4 isoform)
X56571.1 Mouse mRNA for retinoic acid receptor alpha (RAR-alpha 3 isoform)
X56565.1 Mouse mRNA for retinoic acid receptor alpha (RAR-alpha 2 isoform) P
X56572.1 Mouse mRNA for retinoic acid receptor alpha (RAR-alpha 1 isoform) P
BC040383.1 Mus musculus retinoic acid receptor, alpha, mRNA (cDNA clone IMAGE:4195697), partial cds PA
BC038266.1 Mus musculus retinoic acid receptor, alpha, mRNA (cDNA clone IMAGE:4209050), with apparent retained intron PA
BC090396.1 Mus musculus retinoic acid receptor, alpha, mRNA (cDNA clone IMAGE:5292239), partial cds PA
AB221572.1 Mus musculus cDNA pooled tissues:(tissue_type=brain,dev_stage=8-12 days neonate,strain=BALB/c),(tissue_type=testis,dev_stage=adult, strain=C57BL/6J), clone:V01X007C23 P
CT010231.1 Mus musculus full open reading frame cDNA clone RZPDo836B0851D for gene Rara, Retinoic acid receptor, alpha; complete cds, incl. stopcodon P
AK170956.1 Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630213H21 product:retinoic acid receptor, alpha, full insert sequence P
AK042163.1 Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630065D13 product:retinoic acid receptor, alpha, full insert sequence P
AK154623.1 Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630101I23 product:retinoic acid receptor, alpha, full insert sequence P
AK153644.1 Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630030D23 product:retinoic acid receptor, alpha, full insert sequence P
NM_001177303.1 Mus musculus retinoic acid receptor, alpha (Rara), transcript variant 3, mRNA PA
NM_001177302.1 Mus musculus retinoic acid receptor, alpha (Rara), transcript variant 2, mRNA PA
NM_001176528.1 Mus musculus retinoic acid receptor, alpha (Rara), transcript variant 4, mRNA PA
NM_009024.2 Mus musculus retinoic acid receptor, alpha (Rara), transcript variant 1, mRNA P
BC010216.1 Mus musculus retinoic acid receptor, alpha, mRNA (cDNA clone MGC:6163 IMAGE:3498142), complete cds PA

EST sequences (10 of 133) [Show all sequences]

BY009081.1 Clone G630045K12 mixed 5' read
BY066643.1 Clone I920049N19 stomach 5' read
BY084706.1 Clone K630049J10 stomach 5' read P
BY093117.1 Clone K630094L07 mixed 5' read
BY174384.1 Clone F630001I06 uncharacterized tissue 5' read
BY174608.1 Clone F630003I09 uncharacterized tissue 5' read
BY176831.1 Clone F630020N24 uncharacterized tissue 5' read
BY177967.1 Clone F630027C23 uncharacterized tissue 5' read
BY178171.1 Clone F630028F10 uncharacterized tissue 5' read
BY182329.1 Clone F630101I23 uncharacterized tissue 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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