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UGID:257579     UniGene Mm.4372     Mus musculus (mouse)   Rorc
RAR-related orphan receptor gamma (Rorc)

Mouse protein-coding gene Rorc. Represented by 58 ESTs from 34 cDNA libraries. Corresponds to reference sequence NM_011281.2. [UniGene 257579 - Mm.4372]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_035411.2 Rorc gene product M. musculus 100.0 515
NP_005051.2 RORC gene product H. sapiens 92.3 517
NP_001103637.1 roraa gene product D. rerio 66.2 455
NP_001021667.1 Protein NHR-85, isoform a C. elegans 53.7 164
NP_001088389.1 RAR-related orphan receptor C X. laevis 50.5 399
NP_001097256.1 hormone receptor-like in 46, isoform D D. melanogaster 46.6 440
Other hits (2 of 33) [Show all]SpeciesId(%)Len(aa)
XP_003892665.1 PREDICTED: nuclear receptor ROR-gamma isoform 1 P. anubis 92.3 517
XP_001916080.2 PREDICTED: nuclear receptor ROR-gamma E. caballus 92.3 517

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: thymus; mammary gland; liver; bone marrow; muscle; prostate; embryonic tissue; joint; intestine; skin; tongue; pineal gland; mixed; lung; uncharacterized tissue; heart; pituitary gland; bladder; kidney
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 3
Map position: 3|3 F2
UniSTS entry: Chr 3 U39071
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (9)

AK160122.1 Mus musculus whole joints cDNA, RIKEN full-length enriched library, clone:L230004I17 product:RAR-related orphan receptor gamma, full insert sequence P
AK137866.1 Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130030C09 product:RAR-related orphan receptor gamma, full insert sequence P
AK153941.1 Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430008N21 product:RAR-related orphan receptor gamma, full insert sequence P
U43508.1 Mus musculus RORgamma orphan nuclear receptor mRNA, complete cds P
U39071.1 Mus musculus orphan receptor TOR mRNA, complete cds PA
AJ132394.1 Mus musculus mRNA for ROR gamma T protein P
NM_011281.2 Mus musculus RAR-related orphan receptor gamma (Rorc), mRNA P
AF163668.1 Mus musculus RORgamma t mRNA, complete cds P
BC014804.1 Mus musculus RAR-related orphan receptor gamma, mRNA (cDNA clone MGC:25220 IMAGE:4489193), complete cds PA

EST sequences (10 of 58) [Show all sequences]

BY094895.1 Clone K630102P19 heart 5' read P
BY336981.1 Clone L230004I17 joint 5' read P
BY520020.1 Clone E430037N06 thymus 3' read A
BY702611.1 Clone L230004I17 joint 3' read
BY746294.1 Clone E430008N21 thymus 5' read P
BY762214.1 Clone E430008N21 thymus 3' read PA
BX639657.1 Clone LIONp462H06426 uncharacterized tissue 3' read
BY772203.1 Clone L930061E23 embryonic tissue 5' read P
DT911975.1 bone marrow P
CJ098183.1 Clone L930127C16 embryonic tissue 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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