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UGID:270297     UniGene Mm.41775     Mus musculus (mouse)   Atg3
Autophagy related 3 (Atg3)

Mouse protein-coding gene Atg3. Represented by 145 ESTs from 79 cDNA libraries. Corresponds to reference sequence NM_026402.3. [UniGene 270297 - Mm.41775]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_080678.1 ubiquitin-like-conjugating enzyme ATG3 M. musculus 100.0 313
XP_001155234.1 PREDICTED: autophagy related 3 isoform 1 P. troglodytes 99.7 313
NP_071933.2 ATG3 gene product H. sapiens 99.7 313
XP_001503039.1 PREDICTED: ubiquitin-like-conjugating enzyme ATG3-like E. caballus 99.7 313
XP_003132730.3 PREDICTED: autophagy-related 3 isoform 2 S. scrofa 99.7 313
XP_002716751.1 PREDICTED: Apg3p O. cuniculus 99.7 313
NP_001085459.1 ubiquitin-like-conjugating enzyme ATG3 X. laevis 94.9 312
NP_956316.1 apg3l gene product D. rerio 92.4 316
NP_649059.1 Aut1 D. melanogaster 77.3 329
NP_500024.1 Protein ATG-3 C. elegans 64.5 301
NP_568934.1 autophagy-related protein 3 A. thaliana 55.6 284
XP_001699795.1 autophagy protein C. reinhardtii 50.7 300
Other hits (2 of 51) [Show all]SpeciesId(%)Len(aa)
NP_599221.1 Atg3 gene product R. norvegicus 99.4 313
XP_001104361.1 PREDICTED: autophagy-related protein 3-like M. mulatta 99.4 313

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: embryonic tissue; mammary gland; brain; bone marrow; mixed; thymus; spleen; thyroid; prostate; uncharacterized tissue; ovary; lymph node; liver; tongue; intestine; eye; pituitary gland; extraembryonic tissue; bone; testis; fertilized ovum; bladder; lung; kidney; skin; pancreas
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 16
Map position: 16|16 B5
UniSTS entry: Chr 16 WI-22015
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (15)

AK078877.1 Mus musculus adult male colon cDNA, RIKEN full-length enriched library, clone:9030603E10 product:PRECONDITIONING-INDUCIBLE GENE 1 PROTEIN homolog [Rattus norvegicus], full insert sequence P
AK044184.1 Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched library, clone:A830097M19 product:unclassifiable, full insert sequence
AB079386.1 Mus musculus mRNA for Apg3p, complete cds P
AK220135.1 Mus musculus cDNA, clone:Y2G0150O19, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023343, based on BLAT search P
AK213960.1 Mus musculus cDNA, clone:Y2G0130C01, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023343, based on BLAT search P
AK212073.1 Mus musculus cDNA, clone:Y2G0123M11, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023343, based on BLAT search P
AK209780.1 Mus musculus cDNA, clone:Y2G0116D12, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023343, based on BLAT search P
AK199998.1 Mus musculus cDNA, clone:Y1G0133A13, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000023343, based on BLAT search P
AK159231.1 Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420011B13 product:Preconditioning-inducible gene 1 protein homolog [Rattus norvegicus], full insert sequence P
AK150914.1 Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830018E09 product:Preconditioning-inducible gene 1 protein homolog [Rattus norvegicus], full insert sequence P
AK011409.1 Mus musculus 10 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2610016C12 product:HYPOTHETICAL 35.9 KDA PROTEIN (PC3-96) homolog [Homo sapiens], full insert sequence P
AK005266.1 Mus musculus adult male cerebellum cDNA, RIKEN full-length enriched library, clone:1500016K24 product:PRECONDITIONING-INDUCIBLE GENE 1 PROTEIN homolog [Rattus norvegicus], full insert sequence P
NM_026402.3 Mus musculus autophagy related 3 (Atg3), mRNA P
BC010809.1 Mus musculus autophagy-related 3 (yeast), mRNA (cDNA clone MGC:18909 IMAGE:4241199), complete cds PA
BC030053.1 Mus musculus autophagy-related 3 (yeast), mRNA (cDNA clone IMAGE:1345144), with apparent retained intron PA

EST sequences (10 of 145) [Show all sequences]

BY021382.1 Clone G830047C11 mammary gland 5' read
BY058608.1 Clone I730097E17 thymus 5' read P
BY066457.1 Clone I920048N09 mixed 5' read P
BY070821.1 Clone I920074K16 mixed 5' read P
BY086051.1 Clone K630058D24 mixed 5' read
BY088691.1 Clone K630071K19 intestine 5' read
BY103877.1 Clone K630152N05 mixed 5' read P
BY103985.1 Clone K630153E05 mixed 5' read P
BY258549.1 Clone K330038D10 brain 5' read
BY372209.1 Clone G430122H14 mammary gland 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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