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UGID:269946     UniGene Mm.41044     Mus musculus (mouse)   Slc4a4
Solute carrier family 4 (anion exchanger), member 4 (Slc4a4)

Mouse protein-coding gene Slc4a4. Represented by 273 ESTs from 88 cDNA libraries. Corresponds to 3 reference sequences (different isoforms). [UniGene 269946 - Mm.41044]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001129732.1 electrogenic sodium bicarbonate cotransporter 1 isoform b M. musculus 100.0 1093
NP_445876.1 Slc4a4 gene product R. norvegicus 99.5 1078
NP_001128214.1 SLC4A4 gene product H. sapiens 98.7 1093
NP_001030156.1 slc4a4a gene product D. rerio 88.5 1077
NP_001084922.1 solute carrier family 4, sodium bicarbonate cotransporter, member 7 X. laevis 64.2 1018
NP_723264.1 Na[+]-driven anion exchanger 1, isoform B D. melanogaster 57.3 1014
NP_001129776.1 Protein ABTS-1, isoform b C. elegans 54.1 1049
Other hits (2 of 35) [Show all]SpeciesId(%)Len(aa)
XP_003898839.1 PREDICTED: electrogenic sodium bicarbonate cotransporter 1 isoform 2 P. anubis 98.9 1093
XP_004009946.1 PREDICTED: electrogenic sodium bicarbonate cotransporter 1 isoform 2 O. aries 98.8 1093

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: kidney; brain; uncharacterized tissue; mixed; eye; liver; embryonic tissue; thymus; prostate; spinal cord; skin; testis; adrenal gland; ovary; sympathetic ganglion; dorsal root ganglion; stomach; spleen; mammary gland; bladder; heart; adipose tissue; muscle; nasopharynx; intestine; blood
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 5
Map position: 5|5 E2
UniSTS entry: Chr 5 AI176955
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (19)

BC031756.1 Mus musculus solute carrier family 4 (anion exchanger), member 4, mRNA (cDNA clone IMAGE:4222597), with apparent retained intron A
BC020415.1 Mus musculus solute carrier family 4 (anion exchanger), member 4, mRNA (cDNA clone IMAGE:3710145) A
BC049236.1 Mus musculus solute carrier family 4 (anion exchanger), member 4, mRNA (cDNA clone IMAGE:4235872) A
AK165444.1 Mus musculus adult male kidney cDNA, RIKEN full-length enriched library, clone:F530003M02 product:unclassifiable, full insert sequence
AK163619.1 Mus musculus 4 days neonate male adipose cDNA, RIKEN full-length enriched library, clone:B430311M19 product:unclassifiable, full insert sequence
AK140443.1 Mus musculus 10 days neonate medulla oblongata cDNA, RIKEN full-length enriched library, clone:B830021M01 product:solute carrier family 4 (anion exchanger), member 4, full insert sequence P
AK134619.1 Mus musculus adult male medulla oblongata cDNA, RIKEN full-length enriched library, clone:6330501O17 product:unclassifiable, full insert sequence
BC129863.1 Mus musculus cDNA clone IMAGE:40110065, containing frame-shift errors P
BC129864.1 Mus musculus solute carrier family 4 (anion exchanger), member 4, mRNA (cDNA clone IMAGE:40110066), partial cds P
BC148292.2 Mus musculus solute carrier family 4 (anion exchanger), member 4, mRNA (cDNA clone MGC:171146 IMAGE:40110074), complete cds P
NM_001136260.1 Mus musculus solute carrier family 4 (anion exchanger), member 4 (Slc4a4), transcript variant 2, mRNA PA
NM_001197147.1 Mus musculus solute carrier family 4 (anion exchanger), member 4 (Slc4a4), transcript variant 3, mRNA PA
HQ285250.1 Mus musculus strain C57BL electrogenic sodium bicarbonate cotransporter NBCe1 variant D (Slc4a4) mRNA, complete cds, alternatively spliced P
HQ204220.1 Mus musculus strain C57BL/6 electrogenic Na-bicarbonate cotransporter splice variant NBCe1-E (slc4a4) mRNA, complete cds, alternatively spliced P
HQ018820.1 Mus musculus sodium bicarbonate cotransporter NBCe1 variant A (Slc4a4) mRNA, complete cds, alternatively spliced P
AF020195.1 Mus musculus pancreas sodium bicarbonate cotransporter mRNA, complete cds P
AF141934.3 Mus musculus sodium bicarbonate cotransporter NBC1 mRNA, complete cds P
NM_018760.2 Mus musculus solute carrier family 4 (anion exchanger), member 4 (Slc4a4), transcript variant 1, mRNA P
BC026592.1 Mus musculus solute carrier family 4 (anion exchanger), member 4, mRNA (cDNA clone IMAGE:4973987), partial cds PA

EST sequences (10 of 273) [Show all sequences]

BY001590.1 Clone 2126000A11 mixed 5' read
BY001622.1 Clone 2126000K09 mixed 5' read
BY019151.1 Clone G830033N07 mammary gland 5' read P
BY043723.1 Clone I730029J24 mixed 5' read P
BY368667.1 Clone F430112G20 spleen 3' read A
BY374951.1 Clone G630087B13 brain 3' read
CA870946.1 Clone NIA:K0906F05_IMAGE:30084832 uncharacterized tissue 3' read A
CA873123.1 Clone NIA:K0923A06_IMAGE:30086405 uncharacterized tissue 3' read
CA873124.2 Clone NIA:K0923A06_IMAGE:30086405 uncharacterized tissue 5' read
CA874059.1 Clone NIA:K0929E10_IMAGE:30087033 uncharacterized tissue 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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