NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
Finding cDNAs

UGID:2006264     UniGene Mm.395650     Mus musculus (mouse)   Slc6a6
Solute carrier family 6 (neurotransmitter transporter, taurine), member 6 (Slc6a6)

Mouse protein-coding gene Slc6a6. Represented by 390 ESTs from 174 cDNA libraries. Corresponds to reference sequence NM_009320.4. [UniGene 2006264 - Mm.395650]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_033346.2 Slc6a6 gene product M. musculus 100.0 620
NP_001127839.1 SLC6A6 gene product H. sapiens 97.1 619
NP_001032750.1 solute carrier family 6, member 6 D. rerio 89.0 624
NP_001083451.1 solute carrier family 6 (neurotransmitter transporter, GABA), member 13 X. laevis 71.4 549
NP_651930.2 CG1732, isoform A D. melanogaster 60.1 554
NP_505873.2 Protein SNF-11 C. elegans 56.4 587
Other hits (2 of 40) [Show all]SpeciesId(%)Len(aa)
NP_058902.1 Slc6a6 gene product R. norvegicus 99.2 620
XP_001092770.1 PREDICTED: sodium- and chloride-dependent taurine transporter isoform 3 M. mulatta 97.1 619

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: eye; embryonic tissue; brain; thymus; mammary gland; kidney; mixed; blood; skin; bone; uncharacterized tissue; dorsal root ganglion; bone marrow; lung; extraembryonic tissue; testis; pancreas; spinal cord; bladder; adrenal gland; heart; sympathetic ganglion; turbinate; prostate; ovary; tongue; inner ear; spleen; liver; connective tissue; muscle; uterus; fertilized ovum; intestine; stomach; salivary gland; nasopharynx; molar
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 6
Map position: 6 D1|6 40.73 cM
UniSTS entry: Chr 6 RH125023
UniSTS entry: Chr 2 AI265463
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (15)

AK041141.1 Mus musculus adult male aorta and vein cDNA, RIKEN full-length enriched library, clone:A530085H09 product:solute carrier family 6 (neurotransmitter transporter, taurine), member 6, full insert sequence P
AK200892.1 Mus musculus cDNA, clone:Y1G0136F04, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000032185, based on BLAT search P
AK195109.1 Mus musculus cDNA, clone:Y1G0117G17, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000032185, based on BLAT search
AK192063.1 Mus musculus cDNA, clone:Y1G0107L23, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000032185, based on BLAT search
AK191503.1 Mus musculus cDNA, clone:Y1G0106B16, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000032185, based on BLAT search
AK185760.1 Mus musculus cDNA, clone:Y0G0135C11, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000032185, based on BLAT search P
AK182007.1 Mus musculus cDNA, clone:Y0G0120H10, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000032185, based on BLAT search P
AK141806.1 Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length enriched library, clone:D130006A22 product:solute carrier family 6 (neurotransmitter transporter, taurine), member 6, full insert sequence
AK162776.1 Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130042D17 product:solute carrier family 6 (neurotransmitter transporter, taurine), member 6, full insert sequence P
AK165837.1 Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched library, clone:G730005N15 product:solute carrier family 6 (neurotransmitter transporter, taurine), member 6, full insert sequence
AK143510.1 Mus musculus 8 cells embryo 8 cells cDNA, RIKEN full-length enriched library, clone:E860106A12 product:solute carrier family 6 (neurotransmitter transporter, taurine), member 6, full insert sequence P
BC139824.1 Mus musculus cDNA clone IMAGE:40142056
NM_009320.4 Mus musculus solute carrier family 6 (neurotransmitter transporter, taurine), member 6 (Slc6a6), mRNA PA
BC015245.1 Mus musculus solute carrier family 6 (neurotransmitter transporter, taurine), member 6, mRNA (cDNA clone MGC:18313 IMAGE:4242193), complete cds PA
L03292.2 Mus musculus sodium-dependent taurine transporter (Slc6a6) mRNA, complete cds PA

EST sequences (10 of 390) [Show all sequences]

CA563558.1 Clone NIA:K0315C11_IMAGE:30055714 bone 5' read P
BY004757.1 Clone E860005A07 embryonic tissue 5' read
BY007907.1 Clone G431005F14 blood 5' read P
BY015699.1 Clone G830011P13 mammary gland 5' read P
BY026250.1 Clone G930035I10 mammary gland 5' read
BY076339.1 Clone K630003M20 mixed 5' read
BY105243.1 Clone K630159O15 mixed 5' read
BY180424.1 Clone F630040E15 uncharacterized tissue 5' read
BY180738.1 Clone F630041P19 uncharacterized tissue 5' read
BY181986.1 Clone F630049J01 uncharacterized tissue 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help