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UGID:268947     UniGene Mm.38887     Mus musculus (mouse)   Hacl1
2-hydroxyacyl-CoA lyase 1 (Hacl1)

Mouse protein-coding gene Hacl1. Represented by 106 ESTs from 61 cDNA libraries. Corresponds to reference sequence NM_019975.3. [UniGene 268947 - Mm.38887]

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_064359.2 2-hydroxyacyl-CoA lyase 1 M. musculus 100.0 580
NP_036392.2 HACL1 gene product H. sapiens 90.8 577
NP_001086822.1 2-hydroxyacyl-CoA lyase 1 X. laevis 77.6 575
NP_998250.1 hacl1 gene product D. rerio 73.7 566
NP_611460.1 CG11208 D. melanogaster 66.1 565
NP_496455.2 Protein B0334.3, isoform b C. elegans 59.0 562
NP_197240.1 2-hydroxyacyl-CoA lyase A. thaliana 51.1 558
NP_010895.1 putative indolepyruvate decarboxylase family protein S. cerevisiae 45.7 550
Other hits (2 of 49) [Show all]SpeciesId(%)Len(aa)
NP_445945.1 Hacl1 gene product R. norvegicus 95.2 580
XP_003895186.1 PREDICTED: 2-hydroxyacyl-CoA lyase 1 isoform 1 P. anubis 90.7 577

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: liver; mammary gland; embryonic tissue; mixed; testis; joint; extraembryonic tissue; kidney; molar; eye; bone marrow; brain; skin; muscle; stomach; epididymis; thymus; connective tissue; uncharacterized tissue; tongue; lung; spleen; bone; nasopharynx
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 14
Map position: 14 B|14
UniSTS entry: Chr 9 D18Chm54
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (8)

AK050078.1 Mus musculus adult male liver tumor cDNA, RIKEN full-length enriched library, clone:C730010O16 product:2-hydroxyphytanoyl-CoA lyase, full insert sequence P
AK041686.1 Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630030C09 product:2-hydroxyphytanoyl-CoA lyase, full insert sequence P
AK154733.1 Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630104P20 product:unclassifiable, full insert sequence
AK161488.1 Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4932442H07 product:2-hydroxyphytanoyl-CoA lyase (EC 4.1.-.-) (2-HPCL), full insert sequence P
AJ132139.1 Mus musculus mRNA for 2-hydroxyphytanoyl-CoA lyase, partial P
NM_019975.3 Mus musculus 2-hydroxyacyl-CoA lyase 1 (Hacl1), mRNA PA
AK005505.1 Mus musculus adult female placenta cDNA, RIKEN full-length enriched library, clone:1600020H07 product:2-hydroxyphytanoyl-CoA lyase, full insert sequence P
BC021360.1 Mus musculus 2-hydroxyacyl-CoA lyase 1, mRNA (cDNA clone MGC:29195 IMAGE:5011451), complete cds PA

EST sequences (10 of 106) [Show all sequences]

BY101467.1 Clone K630139B03 liver 5' read P
BY141680.1 Clone L930150K18 embryonic tissue 5' read P
BY147322.1 Clone L930233F20 embryonic tissue 5' read P
BY320483.1 Clone L030001H15 connective tissue 5' read P
BY321497.1 Clone L030007L10 connective tissue 5' read P
BY337496.1 Clone L230007O10 joint 5' read P
BY337651.1 Clone L230008O03 joint 5' read P
BY338919.1 Clone L230018M08 joint 5' read P
BY340097.1 Clone L230026F02 joint 5' read P
BY354073.1 Clone 1700119I02 testis 3' read P

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

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