NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
Finding cDNAs

UGID:268947     UniGene Mm.38887     Mus musculus (mouse)   Hacl1
2-hydroxyacyl-CoA lyase 1 (Hacl1)

Mouse protein-coding gene Hacl1. Represented by 106 ESTs from 61 cDNA libraries. Corresponds to reference sequence NM_019975.3. [UniGene 268947 - Mm.38887]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_064359.2 2-hydroxyacyl-CoA lyase 1 M. musculus 100.0 580
NP_036392.2 HACL1 gene product H. sapiens 90.8 577
NP_001086822.1 2-hydroxyacyl-CoA lyase 1 X. laevis 77.6 575
NP_998250.1 hacl1 gene product D. rerio 73.7 566
NP_611460.1 CG11208 D. melanogaster 66.1 565
NP_496455.2 Protein B0334.3, isoform b C. elegans 59.0 562
NP_197240.1 2-hydroxyacyl-CoA lyase A. thaliana 51.1 558
NP_010895.1 putative indolepyruvate decarboxylase family protein S. cerevisiae 45.7 550
Other hits (2 of 49) [Show all]SpeciesId(%)Len(aa)
NP_445945.1 Hacl1 gene product R. norvegicus 95.2 580
XP_003895186.1 PREDICTED: 2-hydroxyacyl-CoA lyase 1 isoform 1 P. anubis 90.7 577

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: liver; mammary gland; embryonic tissue; mixed; testis; joint; extraembryonic tissue; kidney; molar; eye; bone marrow; brain; skin; muscle; stomach; epididymis; thymus; connective tissue; uncharacterized tissue; tongue; lung; spleen; bone; nasopharynx
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 14
Map position: 14 B|14
UniSTS entry: Chr 9 D18Chm54
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (8)

AK050078.1 Mus musculus adult male liver tumor cDNA, RIKEN full-length enriched library, clone:C730010O16 product:2-hydroxyphytanoyl-CoA lyase, full insert sequence P
AK041686.1 Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630030C09 product:2-hydroxyphytanoyl-CoA lyase, full insert sequence P
AK154733.1 Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630104P20 product:unclassifiable, full insert sequence
AK161488.1 Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4932442H07 product:2-hydroxyphytanoyl-CoA lyase (EC 4.1.-.-) (2-HPCL), full insert sequence P
AJ132139.1 Mus musculus mRNA for 2-hydroxyphytanoyl-CoA lyase, partial P
NM_019975.3 Mus musculus 2-hydroxyacyl-CoA lyase 1 (Hacl1), mRNA PA
AK005505.1 Mus musculus adult female placenta cDNA, RIKEN full-length enriched library, clone:1600020H07 product:2-hydroxyphytanoyl-CoA lyase, full insert sequence P
BC021360.1 Mus musculus 2-hydroxyacyl-CoA lyase 1, mRNA (cDNA clone MGC:29195 IMAGE:5011451), complete cds PA

EST sequences (10 of 106) [Show all sequences]

BY101467.1 Clone K630139B03 liver 5' read P
BY141680.1 Clone L930150K18 embryonic tissue 5' read P
BY147322.1 Clone L930233F20 embryonic tissue 5' read P
BY320483.1 Clone L030001H15 connective tissue 5' read P
BY321497.1 Clone L030007L10 connective tissue 5' read P
BY337496.1 Clone L230007O10 joint 5' read P
BY337651.1 Clone L230008O03 joint 5' read P
BY338919.1 Clone L230018M08 joint 5' read P
BY340097.1 Clone L230026F02 joint 5' read P
BY354073.1 Clone 1700119I02 testis 3' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help