NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
Finding cDNAs

UGID:535104     UniGene Mm.36501     Mus musculus (mouse)   Map1a
Microtubule-associated protein 1 A (Map1a)

Mouse protein-coding gene Map1a. Represented by 379 ESTs from 74 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 535104 - Mm.36501]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_115769.1 microtubule-associated protein 1A isoform 1 M. musculus 100.0 3013
NP_002364.5 MAP1A gene product H. sapiens 87.2 2802
XP_001338014.4 PREDICTED: hypothetical protein LOC797545 D. rerio 55.0 3725
Other hits (2 of 20) [Show all]SpeciesId(%)Len(aa)
NP_112257.1 Map1a gene product R. norvegicus 94.3 2773
XP_003480443.1 PREDICTED: microtubule-associated protein 1A S. scrofa 93.5 1289

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; mixed; embryonic tissue; eye; uncharacterized tissue; testis; pancreas; joint; inner ear; muscle; heart; uterus; spinal cord; bladder; dorsal root ganglion; mammary gland; olfactory mucosa; adipose tissue; lung; intestine; skin; sympathetic ganglion; connective tissue
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 2
Map position: 2 E5|2 60.37 cM
UniSTS entry: Chr 2 MDB0962
UniSTS entry: Chr 2 AI711500
UniSTS entry: Chr 2 stSG627752
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (10)

AK079600.1 Mus musculus adult male spinal cord cDNA, RIKEN full-length enriched library, clone:A330061C18 product:inferred: microtubule-associated protein 1A {Rattus norvegicus}, full insert sequence
AK018185.1 Mus musculus adult male medulla oblongata cDNA, RIKEN full-length enriched library, clone:6330416M19 product:unclassifiable, full insert sequence
BC028853.1 Mus musculus microtubule-associated protein 1 A, mRNA (cDNA clone IMAGE:4501876), containing frame-shift errors PA
AF182213.1 Mus musculus microtubule-associated protein MAP1A (Mtap1) mRNA, alternative splice product, partial cds P
AF182212.1 Mus musculus microtubule-associated protein MAP1A (Mtap1) mRNA, partial cds P
AK163468.1 Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230205G14 product:Microtubule-associated protein 1A (MAP 1A) (Proliferation-related protein p80) [Contains: MAP1 light chain LC2] homolog [Homo sapiens], fu ... P
AK147474.1 Mus musculus cDNA, RIKEN full-length enriched library, clone:M5C1049I18 product:microtubule-associated protein 1 A, full insert sequence P
AK160546.1 Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:2410027B07 product:microtubule-associated protein 1 A, full insert sequence P
NM_032393.2 Mus musculus microtubule-associated protein 1 A (Map1a), transcript variant 1, mRNA PA
NM_001173506.1 Mus musculus microtubule-associated protein 1 A (Map1a), transcript variant 2, mRNA PA

EST sequences (10 of 379) [Show all sequences]

CA750370.1 Clone IMAGE:6831894 brain 5' read P
CA752577.1 Clone IMAGE:6831305 brain 5' read A
BY003943.1 Clone E530118K24 brain 5' read P
BY232481.1 Clone F930025M24 inner ear 5' read P
BY245081.1 Clone K230054G13 brain 5' read P
BY245436.1 Clone K230056F08 brain 5' read P
BY272118.1 Clone K430050E11 brain 5' read P
BY283937.1 Clone K530014M15 brain 5' read P
BY287626.1 Clone K530041K06 brain 5' read P
BY292070.1 Clone K530313F15 brain 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help