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UGID:1140139     UniGene Mm.341103     Mus musculus (mouse)   Rbfox3
RNA binding protein, fox-1 homolog (C. elegans) 3 (Rbfox3)

Mouse protein-coding gene Rbfox3. Represented by 139 ESTs from 55 cDNA libraries. Corresponds to 3 reference sequences (different isoforms). [UniGene 1140139 - Mm.341103]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001034256.1 Rbfox3 gene product M. musculus 100.0 373
NP_001076044.1 RBFOX3 gene product H. sapiens 97.1 311
XP_002664038.2 PREDICTED: RNA binding protein fox-1 homolog 3-like, partial D. rerio 90.5 324
NP_508446.1 Protein FOX-1 C. elegans 65.2 158
NP_001106346.1 RNA binding protein, fox-1 homolog 2 X. laevis 64.9 372
NP_001097573.1 Ataxin-2 binding protein 1, isoform F D. melanogaster 59.5 222
Other hits (2 of 36) [Show all]SpeciesId(%)Len(aa)
NP_001127970.1 fox-1 homolog C R. norvegicus 99.2 374
XP_001109611.2 PREDICTED: fox-1 homolog C-like M. mulatta 97.1 311

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; mixed; embryonic tissue; eye; spinal cord; uncharacterized tissue; pituitary gland; dorsal root ganglion; lung; intestine; sympathetic ganglion
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 11
Map position: 11 E2|11 83.22 cM
UniSTS entry: Chr 11 RH125152
UniSTS entry: Chr 11 D11Bwg0517e
UniSTS entry: D11Bwg0517e
UniSTS entry: Chr 1 Rnu2
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (12)

AK079086.1 Mus musculus adult male diencephalon cDNA, RIKEN full-length enriched library, clone:9330161I19 product:HEXARIBONUCLEOTIDE BINDING PROTEIN 3 (FRAGMENT) homolog [Mus musculus], full insert sequence P
AK086669.1 Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:D930044O20 product:similar to HEXARIBONUCLEOTIDE BINDING PROTEIN 3 (FRAGMENT) [Mus musculus], full insert sequence P
AK049926.1 Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched library, clone:C630012A02 product:similar to HEXARIBONUCLEOTIDE BINDING PROTEIN 3 (FRAGMENT) [Mus musculus], full insert sequence P
AK032676.1 Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:6530414G11 product:hypothetical protein, full insert sequence P
BC054403.1 Mus musculus DNA segment, Chr 11, Brigham & Women's Genetics 0517 expressed, mRNA (cDNA clone MGC:62856 IMAGE:6494361), complete cds PA
NM_001024931.2 Mus musculus RNA binding protein, fox-1 homolog (C. elegans) 3 (Rbfox3), transcript variant 3, mRNA P
AK160816.1 Mus musculus 17 days embryo head cDNA, RIKEN full-length enriched library, clone:3321404E08 product:Similar to HEXARIBONUCLEOTIDE binding protein 3 homolog [Mus musculus], full insert sequence P
NM_001039167.1 Mus musculus RNA binding protein, fox-1 homolog (C. elegans) 3 (Rbfox3), transcript variant 1, mRNA P
NM_001039168.1 Mus musculus RNA binding protein, fox-1 homolog (C. elegans) 3 (Rbfox3), transcript variant 2, mRNA P
FJ958311.1 Mus musculus Fox-3 transcript variant 2 mRNA, partial cds, alternatively spliced P
FJ958310.1 Mus musculus Fox-3 transcript variant 1 mRNA, partial cds, alternatively spliced P
AF229056.1 Mus musculus hexaribonucleotide binding protein 3 (Hrnbp3) mRNA, partial cds P

EST sequences (10 of 139) [Show all sequences]

BY237366.1 Clone K230001I19 brain 5' read
BY360026.1 Clone 4121404C13 embryonic tissue 3' read A
BY370223.1 Clone G130201L23 mixed 3' read P
BY459173.1 Clone K630111D13 brain 3' read A
BY599860.1 Clone K230001I19 brain 3' read A
BY616038.1 Clone K330014A08 brain 3' read
BY618454.1 Clone K330036I16 brain 3' read A
BY619992.1 Clone K330047K23 brain 3' read A
BY628817.1 Clone K430027J01 brain 3' read
BY643270.1 Clone K430356C13 brain 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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